View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_high_1 (Length: 550)
Name: NF20155_high_1
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 253 - 531
Target Start/End: Original strand, 47637351 - 47637629
Alignment:
| Q |
253 |
gtagttttgagttcaaaacagtgtaatattttgtatttgcttatttatcaatgtggaaataataactgcaggtcgtttaggccatcttgtatttggtagc |
352 |
Q |
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| T |
47637351 |
gtagttttgagttcaaaacagtgtaatattttgtatttgcttatttatcaatgtggaaataataactgcaggtcgtttaggtcatcttgtatttggtagc |
47637450 |
T |
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| Q |
353 |
ctcgtaagctggcaaaatatcaacttttgaaatgtagcagaccaattatgtattggttgaggcccattttcatttcatgatggccatggcatctttctga |
452 |
Q |
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| T |
47637451 |
ctcgtaagctggcaaaatatcaacttttgaaatgtagcagaccaattatgtattggttgaggcccattttcatttcatgatggccatggcatctttctga |
47637550 |
T |
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| Q |
453 |
atttgtattttgatctattggtgttcaaaatgtgtcgtagtgtcactctgctagttgcagccgcaacacaacaggttgt |
531 |
Q |
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| T |
47637551 |
atttgtattttgatctattggtgttcaaaatgtgtcgtagtgtcattctgctagttgcagccgcaacacaacaggttgt |
47637629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 47637131 - 47637361
Alignment:
| Q |
5 |
tgtcgaagaatatccagaagatagacctacaatggcaacagtagtgctcatgctagatagtttcactgttacgctaccggtacctaagcagcctgcattt |
104 |
Q |
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| T |
47637131 |
tgtccaagaagatccagaagatagacctacaatggcaacagtagtgctcatgctagatagtttcactgttacgctaccggtacctaagcagcctgcattt |
47637230 |
T |
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| Q |
105 |
tttctacacagtggaactgattcaaacatgccgacaatacaaattagtcaatctactaccaattgaataccaaagcttgaaaacgtgaggagattttaaa |
204 |
Q |
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| T |
47637231 |
tttctacacagtggaactgattcaaacatgccgacaatacaaattagtcaatctactaccaattgaataccaaagcttgaaaacgtgaggagattttaaa |
47637330 |
T |
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| Q |
205 |
agtttagtctgttagtgtatgtagttttgag |
235 |
Q |
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| T |
47637331 |
agtttagtctgttagtgtatgtagttttgag |
47637361 |
T |
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