View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20155_high_10 (Length: 315)

Name: NF20155_high_10
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20155_high_10
NF20155_high_10
[»] chr1 (6 HSPs)
chr1 (13-306)||(25887729-25888031)
chr1 (13-306)||(25481740-25482044)
chr1 (13-306)||(25861991-25862295)
chr1 (13-306)||(25605567-25605862)
chr1 (117-162)||(20949986-20950033)
chr1 (117-162)||(20950957-20951004)
[»] chr4 (1 HSPs)
chr4 (97-162)||(46015608-46015675)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 25888031 - 25887729
Alignment:
Q  13 aaaatcaacatatacacttaatttttgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggtgcccctccttggcaagttct 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25888031 aaaatcaacatatacacttaatttctgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggcgcccctccttggcaagttct 25887932  T
Q  113 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnngaacaaggcatgactcaaacttaccttcatgtagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  25887931 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatc-aaaaaagaacaaggcatgactcaaacttaccttcatgtagc 25887833  T
Q  213 tgcttcacatgatgatgcaggttgtgaaacaggtttgt----------cgtcaaagtatgcttctcggcaatgttggttgtattactttcctcttctttc 302  Q
    ||  |||| ||| |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887832 tgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtacgtcaaagtatgcttctcggcaatgttggttgtattactttcctcttctttc 25887733  T
Q  303 ttct 306  Q
    ||||    
T  25887732 ttct 25887729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 25481740 - 25482044
Alignment:
Q  13 aaaatcaacatatacacttaatttttgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggtgcccctccttggcaagttct 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||    
T  25481740 aaaatcaacatatacacttaatttctgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaaattct 25481839  T
Q  113 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgat-cnnnnnnngaacaaggcatgactcaaacttaccttcatgtag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||    
T  25481840 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgataaaaaaaaagaacaaggcatgactcaaacttaccttcaggtag 25481939  T
Q  212 ctgcttcacatgatgatgcaggttgtgaaacaggtttgtc----------gtcaaagtatgcttctcggcaatgttggttgtattactttcctcttcttt 301  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25481940 ctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcaatgttggttgtattactttcctcttcttt 25482039  T
Q  302 cttct 306  Q
    |||||    
T  25482040 cttct 25482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 25862295 - 25861991
Alignment:
Q  13 aaaatcaacatatacacttaatttttgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggtgcccctccttggcaagttct 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||    
T  25862295 aaaatcaacatatacacttaatttctgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaaattct 25862196  T
Q  113 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgat-cnnnnnnngaacaaggcatgactcaaacttaccttcatgtag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||    
T  25862195 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgataaaaaaaaagaacaaggcatgactcaaacttaccttcaggtag 25862096  T
Q  212 ctgcttcacatgatgatgcaggttgtgaaacaggtttgtc----------gtcaaagtatgcttctcggcaatgttggttgtattactttcctcttcttt 301  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25862095 ctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcaatgttggttgtattactttcctcttcttt 25861996  T
Q  302 cttct 306  Q
    |||||    
T  25861995 cttct 25861991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 25605862 - 25605567
Alignment:
Q  13 aaaatcaacatatacacttaatttttgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggtgcccctccttggcaagttct 112  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  25605862 aaaatcaacatatacacttaattactgatcccatcatccaaatggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttct 25605763  T
Q  113 gtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnngaacaa-ggcatgactcaaacttaccttcatgtag 211  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||       |||||| ||||||||||||||||||||||||||||    
T  25605762 gtttattgttttgatcaaataacaaacaaagg--------ttttaatatgttttgatc-aaaaaagaacaagggcatgactcaaacttaccttcatgtag 25605672  T
Q  212 ctgcttcacatgatgatgcaggttgtgaaacaggtttgtc----------gtcaaagtatgcttctcggcaatgttggttgtattactttcctcttcttt 301  Q
    |||  |||| ||| ||||||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25605671 ctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcgatgttggttgtattactttcctcttcttt 25605572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 20950033 - 20949986
Alignment:
Q  117 attgttttgatcaaataacaaac--aaaggtgaggatattttaatatg 162  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||||    
T  20950033 attgttttgatcaaataaacaaccaaaaggtgaggatattttaatatg 20949986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 20951004 - 20950957
Alignment:
Q  117 attgttttgatcaaataacaaac--aaaggtgaggatattttaatatg 162  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||||    
T  20951004 attgttttgatcaaataaacaaccaaaaggtgaggatattttaatatg 20950957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 46015675 - 46015608
Alignment:
Q  97 ctccttggcaagttctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 162  Q
    |||||| |||| ||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  46015675 ctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 46015608  T

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