View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_high_13 (Length: 254)
Name: NF20155_high_13
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 47636663 - 47636860
Alignment:
| Q |
17 |
taggcacatagtaagtacatgtttatatatgcgacatatatttgttgaagtacttgtcctttttgtggatgatagtgttttatagcaatgataaatatgt |
116 |
Q |
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| T |
47636663 |
taggcacatagtaagtacatgtttatatatgcgacata---------aagtacttgtcctttttgtggatgatagtgttttatagcaatgataaatatgt |
47636753 |
T |
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| Q |
117 |
gtttgtgtttaagtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagtcctcgttatggagat |
216 |
Q |
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| T |
47636754 |
gtttgtgtttaagtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagtcctcgttatggagat |
47636853 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 47627663 - 47627698
Alignment:
| Q |
128 |
agtggttacatgtctccggagtatgcaatgcatgga |
163 |
Q |
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| T |
47627663 |
agtggttacatgtctccggaatatgcaatgcatgga |
47627698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 15982001 - 15981925
Alignment:
| Q |
128 |
agtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagtcct |
204 |
Q |
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| T |
15982001 |
agtggttacatgtctccagagtatgcaatggaaggagttttttcgacaaagtctgatgtgtacagctttggagtcct |
15981925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 19149022 - 19148946
Alignment:
| Q |
128 |
agtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagtcct |
204 |
Q |
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| T |
19149022 |
agtggttacatgtctccagagtatgcaatggaaggagttttttcgacaaagtctgatgtgtacagctttggagtcct |
19148946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 36437581 - 36437508
Alignment:
| Q |
128 |
agtggttacatgtctccggagtatgcaatgcatggagagttctcgataaagtctgatgtatacagttttggagt |
201 |
Q |
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| T |
36437581 |
agtggttatatgtctccggagtatgccatggaaggacaattttcggtgaagtctgatgtatacagctttggagt |
36437508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 44450214 - 44450249
Alignment:
| Q |
219 |
taagttctttattctttgatattcacaatttatttt |
254 |
Q |
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| T |
44450214 |
taagttctttattctttgacattcacaatttatttt |
44450249 |
T |
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