View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_high_3 (Length: 406)
Name: NF20155_high_3
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 41564788 - 41565174
Alignment:
| Q |
1 |
taaggagcttgcagagatggctaagaaaggtgtagaagaaggaggatcttctcacttcaatgtcacactattgattcaagatatccttcaacactcaaca |
100 |
Q |
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| T |
41564788 |
taaggagcttgcagatatggctaagaaaggtgtagaagaaggaggatcttctcacttcaatgtcacactattgattcaagatatccttcaacactcaaca |
41564887 |
T |
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| Q |
101 |
gagtagattgatgttgtttgcaac----atttttcttgttgatgtggaaaattgcttaaagtgacttaatttgcaaaatccaaatgctgttatcattgta |
196 |
Q |
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| T |
41564888 |
gagtagattgatgttgtttgcaacattaatttttcttgttgatgtggaaaattgcttaaagtgacttaatttgcaaaatccaaatgctgttatcattgta |
41564987 |
T |
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| Q |
197 |
tgttcaggaagtatatatatatgtagtttaacctgttctgagaaaatggttttctttaaaaagaaaacttttattaattaatattaaaccaagaacatag |
296 |
Q |
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| T |
41564988 |
tgttcaggaag------tatatgtagtttaacctgttctgaggaaatggttttctttaaaaagaaaac-tttattaattaatattaaaccaagaacatag |
41565080 |
T |
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| Q |
297 |
tgtaccatgattagagtttggattagaaaattactagcaaacttcaaatgcacatgcattgtagaaaaactacacaactacatgaatcaaagtg |
390 |
Q |
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| T |
41565081 |
tgtaccatgattagagtttggattagaaaattactagcaaacttcaaatgcacatgcattgtagaaaaactacacaactacatgaatcaaagtg |
41565174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 41564224 - 41564300
Alignment:
| Q |
136 |
tgatgtggaaaattgcttaaagtgacttaatttgcaaaatccaaatgctgttatcattgtatgttcaggaagtatat |
212 |
Q |
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| T |
41564224 |
tgatgtagaaaattgcttaaagtggcttgatttgcaaaagcaaaattctgttatatatgtatgcttaggaagtatat |
41564300 |
T |
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