View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_high_9 (Length: 358)
Name: NF20155_high_9
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 41487160 - 41486822
Alignment:
| Q |
1 |
caagactatgacatataacgtgtcaaactccgaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcatagcttattttcac |
100 |
Q |
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| T |
41487160 |
caagactatgacatataacgtgtcaaactcggaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcatagcttattttcac |
41487061 |
T |
|
| Q |
101 |
ccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcttggctaaaggcatacaccctaggtactctcataaatctaa |
200 |
Q |
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| T |
41487060 |
ccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcctggctaaaggcatacaccctaggtactcttataaatctaa |
41486961 |
T |
|
| Q |
201 |
agtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaaataaggaaaactt |
300 |
Q |
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| T |
41486960 |
agtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaaataaggaaaactt |
41486861 |
T |
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| Q |
301 |
aagataatcactgtcacaaaaaatatctgatgtacttta |
339 |
Q |
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| T |
41486860 |
aagataatcactgtcacaaaaaatatctgatgtacttta |
41486822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 313
Target Start/End: Complemental strand, 41488896 - 41488768
Alignment:
| Q |
188 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaattta---tagaaatattaaatgtctaaaatcatg |
284 |
Q |
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| T |
41488896 |
ctcataaatctatagtaacgcaacatatagacatcaattgcagtattttagaaattactgggaaaatgtacagaagaaatactagatgactaaaatcatg |
41488797 |
T |
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| Q |
285 |
caaataaggaaaacttaagataatcactg |
313 |
Q |
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|||||||| |||| |||||||||| |||| |
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| T |
41488796 |
caaataagcaaaatttaagataattactg |
41488768 |
T |
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