View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_11 (Length: 334)
Name: NF20155_low_11
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 5307074 - 5306836
Alignment:
| Q |
16 |
caagttacacctggtaaagctctggctattgagaacaagttcagttgcactagtgaggacatatatagaggaactacaatgaagatgaagatctctagag |
115 |
Q |
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| T |
5307074 |
caagttacacctggtaaagctctggctattgagaacaagttcagttgcactagtgaggacatatatagaggaactacaatgaagatgaagatctctagag |
5306975 |
T |
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| Q |
116 |
aaattgtatattctagtgagtgagtactagtagttacttttactgtgctatttcttctcccttttctttagtcggttttgtgcttaatgaattggttgaa |
215 |
Q |
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| T |
5306974 |
aaattgtatattctagtgagtgagtactagtagttacttttactgtgctatttcttctcccttttctttagtcggttttgtgcttaatgaattggttgaa |
5306875 |
T |
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| Q |
216 |
gtttaatttggtcctaaagtatatgaaattcttcatttt |
254 |
Q |
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| T |
5306874 |
gtttaatttggtcctaaagtatatgaaattcttcatttt |
5306836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 5306046 - 5305973
Alignment:
| Q |
252 |
tttagaatgtatcattattctttgctgtggnnnnnnnn--catatactattgagttctttgtcaagagattcat |
323 |
Q |
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| T |
5306046 |
tttagaatgtatcagtattctttgctgtggttttttttttcatatactattgagttctttgtcaagagattcat |
5305973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 43 - 256
Target Start/End: Original strand, 30480864 - 30481077
Alignment:
| Q |
43 |
attgagaacaagttcagttgcactagtgaggacatatatagaggaactacaatgaagatgaagatctctagagaaattgtatattctagtgagtgagtac |
142 |
Q |
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| T |
30480864 |
attgagaacaagttgagctgcactcttgaggagatatatagaggaactacaaagaagatgaagatctctagagaaattgcagatgttagtgggtgagtac |
30480963 |
T |
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| Q |
143 |
tagtagttacttttactgtgctatttcttctcccttttctttagtcggttttgtgcttaatgaattggttgaagtttaatttggt-cctaaagtatatga |
241 |
Q |
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| T |
30480964 |
tagtaattgcttttactctgcaatttcttttacatttt-tttagtcggttttgtgcttggtgaaatggttgaagtttaatttggtccctaaagcataaaa |
30481062 |
T |
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| Q |
242 |
aattcttcattttag |
256 |
Q |
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||| ||||||||||| |
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| T |
30481063 |
aatccttcattttag |
30481077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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