View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_13 (Length: 288)
Name: NF20155_low_13
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 13872196 - 13872458
Alignment:
| Q |
22 |
caagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtataaacaaaaag |
121 |
Q |
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| T |
13872196 |
caagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatggggccattgattatttgtagcgatgcctggtataaacaaaaat |
13872295 |
T |
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| Q |
122 |
tttaaaagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataagtgcttgaaa |
221 |
Q |
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| T |
13872296 |
tttaaaagtgcttaatcaaactatttatccattctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataagtgcttgaaa |
13872395 |
T |
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| Q |
222 |
cgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaataatctacc |
284 |
Q |
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| T |
13872396 |
cgaacatttttaatgtcacccatgtacacatacacgataaaatcttctaaagaataatttacc |
13872458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 13884488 - 13884584
Alignment:
| Q |
22 |
caagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtataaacaaaaa |
120 |
Q |
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| T |
13884488 |
caagaacttcaacaagtgtagtgatcacttcccataaacacaattaacaaggaaatgaagccattaattacttgcagtgatg--tcgtataaacaaaaa |
13884584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 13876670 - 13876736
Alignment:
| Q |
127 |
aagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttct |
193 |
Q |
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| T |
13876670 |
aagtgtttaatcaaactatttatccatcttactaattttaaatttgtttcccttaatgcaaacttct |
13876736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 12957710 - 12957646
Alignment:
| Q |
22 |
caagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccatt |
86 |
Q |
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| T |
12957710 |
caagaacttcaaaaagtgtagtaatcacttcccataaacacaattaacaaggaaatgaggccatt |
12957646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 13876911 - 13876969
Alignment:
| Q |
219 |
aaacgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaata |
277 |
Q |
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| T |
13876911 |
aaacgaacctttttcatgccacccatgtatacatacacaataaaatcttctaaagaata |
13876969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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