View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_16 (Length: 247)
Name: NF20155_low_16
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 53869853 - 53870066
Alignment:
| Q |
24 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869853 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
53869952 |
T |
|
| Q |
124 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53869953 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
53870052 |
T |
|
| Q |
219 |
ctgtaacttgtatg |
232 |
Q |
| |
|
||||||||| |||| |
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|
| T |
53870053 |
ctgtaacttctatg |
53870066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 5277628 - 5277841
Alignment:
| Q |
24 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5277628 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
5277727 |
T |
|
| Q |
124 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5277728 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaattcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
5277827 |
T |
|
| Q |
219 |
ctgtaacttgtatg |
232 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5277828 |
ctgtaacttttatg |
5277841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 40727171 - 40727384
Alignment:
| Q |
24 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40727171 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
40727270 |
T |
|
| Q |
124 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
40727271 |
tacccatcatcttctagacaacccctcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaatttcatattttctagttttag |
40727370 |
T |
|
| Q |
219 |
ctgtaacttgtatg |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40727371 |
ctgtaacttgtatg |
40727384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 625285 - 625073
Alignment:
| Q |
24 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
123 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
625285 |
taatggtggctcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagtatttctaatttcagttgca |
625186 |
T |
|
| Q |
124 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
625185 |
tacccatcatcttcta-acaaccactcattgtttctcttacatcccaactcctcagcaagtgtattttaccaaatacaattccatgttttctagttttag |
625087 |
T |
|
| Q |
219 |
ctgtaacttgtatg |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
625086 |
ttgtaacttgtatg |
625073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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