View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_6 (Length: 394)
Name: NF20155_low_6
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_6 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 888350 - 888721
Alignment:
| Q |
7 |
ctgagatgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgact |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888350 |
ctgacatgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgact |
888449 |
T |
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| Q |
107 |
cgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgac |
206 |
Q |
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| T |
888450 |
cgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgac |
888549 |
T |
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| Q |
207 |
aaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacaca |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888550 |
aaaaacagaatttcattaataaaataacaagcaaatattgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacaca |
888649 |
T |
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| Q |
307 |
gtccataatgtgtgttattagaccataggatacaagaatttccaaacatttta-cttctcaggaacctcatt |
377 |
Q |
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| T |
888650 |
gtccataatgtgtgttattagaccataggatacaagaatttccaaacattttaccttctcaggaacctcatt |
888721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 98 - 377
Target Start/End: Complemental strand, 1002938 - 1002651
Alignment:
| Q |
98 |
gttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacata-tatgatagcattgtagaacctgatttttg |
196 |
Q |
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| T |
1002938 |
gttacgactcacatatatcgtgacagagcgacgaccatagttataactactaaatgactaagaacacataatacgatagcattgtagaacctgttttttg |
1002839 |
T |
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| Q |
197 |
cttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacat---aactttctgtgatttctgct |
293 |
Q |
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| T |
1002838 |
cttaaatggcaaaaacagaatttcattaataaaatagcatgcaaatatttcca---ttattgaaatcctcagaacataacaactttctgtgatttctgct |
1002742 |
T |
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| Q |
294 |
aag-------tgcaaacacagtccataatgtgtgttattagaccataggatacaagaatttccaaacattttacttctcaggaacctcatt |
377 |
Q |
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| T |
1002741 |
aagtgcaaactgcaaacacagtccataatgtgtgttattagactataggatacaagaatttccaaacatttaccttctcaggatcctcatt |
1002651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 496098 - 496177
Alignment:
| Q |
14 |
gaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatc |
95 |
Q |
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| T |
496098 |
gaaccgatttgtgacagtcctttcgtgtactatgatcaccacatgtggcaaaatcagttagtg--atacatattactgcatc |
496177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 377
Target Start/End: Complemental strand, 913735 - 913695
Alignment:
| Q |
338 |
acaagaatttccaaacatttta-cttctcaggaacctcatt |
377 |
Q |
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| T |
913735 |
acaagaatttccaaacattttaccttctcaggaacctcatt |
913695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 16451 - 16373
Alignment:
| Q |
12 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattact |
90 |
Q |
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| T |
16451 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcacatgtggcaaaatcaggtagtaatatacatattact |
16373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 7553384 - 7553339
Alignment:
| Q |
185 |
acctgatttttgcttaaatgacaaaaacagaatttcattaataaaa |
230 |
Q |
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| T |
7553384 |
acctggtttttgcttaaatgacaaaaaccgaattgcattaataaaa |
7553339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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