View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_8 (Length: 365)
Name: NF20155_low_8
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 33432099 - 33432430
Alignment:
| Q |
13 |
aatatggtgaaggtaaatattacagtactctgtctggacaagttgcacttggctaaagaaaagaataggccatgccaaaatcatgcatctcattcaagca |
112 |
Q |
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| T |
33432099 |
aatatggtgaaggtaaatattacagtactctgtctggacaagttgcacttggctaaagaa-----tagtccattccaaaatcatgcatctcattcaagca |
33432193 |
T |
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| Q |
113 |
atgttcttcagaatataaattaatcataaatacaaagagattattccaaaatcactcacctgtagcttcattagatgaggttgagcagctcccccgagat |
212 |
Q |
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| T |
33432194 |
atgttcttcagaatataaattaatcataaatacaaagagattattccaaaatcactcatctgtagcttcattagatgaggttgagcagctcccccgagat |
33432293 |
T |
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| Q |
213 |
aggttttcttcccggagtgtcacgacagagctaaaattatctagtaagcattcttcatacataaccatgagcttcttagctacctatttaaatcatgaat |
312 |
Q |
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| T |
33432294 |
aggttttcttcccggagtgtcacgacagagctaaaattatctagtaagcattcttcatacataaccatgagcttcttagctacctatttaaatcatgaat |
33432393 |
T |
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| Q |
313 |
aagtggacattgttagcattcttcatacataaaatag |
349 |
Q |
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| T |
33432394 |
aagtggacattgttagcattcttcatacataaaatag |
33432430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 33967343 - 33967280
Alignment:
| Q |
236 |
gacagagctaaaattatctagtaagcattcttcatacataaccatgagcttcttagctacctat |
299 |
Q |
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| T |
33967343 |
gacagagctaaaattatcttgtaagcattcttcatgcataaccatgagtttcttagctacctat |
33967280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 33967501 - 33967446
Alignment:
| Q |
94 |
catgcatctcattcaagcaatgttcttcagaatataaattaatcataaatacaaag |
149 |
Q |
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| T |
33967501 |
catgcatctcattcaatcaatgttcttcagaatacaaattaatcatgcatacaaag |
33967446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 44945833 - 44945748
Alignment:
| Q |
217 |
tttcttcccggagtgtcacgacagagctaaaattatctagtaagcattcttcatacataaccatgagcttcttagctacctattta |
302 |
Q |
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| T |
44945833 |
tttcctccctgagtatctcgacagagctaaaattgccttgtaagcattctttatgcataagcatgagtttggtagctacctcttta |
44945748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 51162069 - 51162018
Alignment:
| Q |
239 |
agagctaaaattatctagtaagcattcttcatacataaccatgagcttctta |
290 |
Q |
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| T |
51162069 |
agagataaaatgaccttgtaagcattcttcatacataaccatgagtttctta |
51162018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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