View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20155_low_9 (Length: 360)
Name: NF20155_low_9
Description: NF20155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20155_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 39251799 - 39251473
Alignment:
| Q |
18 |
cttttgatgtggtataacagggaaatcaatctttctccttaatcatcatgtaaacaagtggaagaataacagacacaaaattgtgaagaaatgtttagga |
117 |
Q |
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| T |
39251799 |
cttttgatgtggtataacagggaaatcaatctttctccttaatcatcatgtaaacaagtggaagaatcacagacacaaagttgtgaagaaatgtttagga |
39251700 |
T |
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| Q |
118 |
gcgtctatatactgttcaagcgatgttccctctattcagcaattgagtcatgctcggcttatttattccgttgctccatctatgggccacaatcaggttt |
217 |
Q |
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| T |
39251699 |
gcgtctatatactgttcaagcgatgttccctctattcagcaattgagtcatgctcggcttatttattccgttgctccatctatgggccacaatcaggttt |
39251600 |
T |
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| Q |
218 |
ctgcataattcaattccataacttcaatacctatttaaattatgtatgaaatcacattattgtgattgtaataataataggagtctcatccagaatcaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39251599 |
ctgcataattcaattccataacttcaatacctatttaaattatgtatgaaatcacattattgtgattgtaataataacaggagtctcatccagaatcaca |
39251500 |
T |
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| Q |
318 |
ttttagagttcctgctattgtctctgc |
344 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
39251499 |
ttttagagttcctgctattgtcactgc |
39251473 |
T |
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