View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_high_1 (Length: 588)
Name: NF20156_high_1
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 32549216 - 32549758
Alignment:
| Q |
18 |
tttaacagaaggtcttacctacccataagcattagcagatgcatgaaacnnnnnnnnnnnnnnnnnnnnnnngcataatggtgatggtcaaatgtacgga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32549216 |
tttaacagaaggtcttacctacccataagcattagcagatgcatgaaacaaataaaaatgaaaaaaataaatgcataatggtgatggtcaaatgtacgga |
32549315 |
T |
|
| Q |
118 |
tgttattgattgccatgattatattgatgttgcatgattctggcatggatttacctttcttgaagaaatctactcattggttcagtatatgattttctaa |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32549316 |
tattattgattgccatgattatattgatgttgcatgattctggcatggatttacctttcttgaagaaatctactcaatggttcagtatatgattttctaa |
32549415 |
T |
|
| Q |
218 |
aatagccagcttgcactgaaaaagcaagagattcatccaccccaaagtcctggaaaaaagaaaatggtcaacatttagcaagagaaatacttacatggtt |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549416 |
aatagccagcttgcagtgaaaaagcaagagattcatccaccccaaagtcctggaaaa-agaaaatggtcaacatttagcaagagaaatacttacatggtt |
32549514 |
T |
|
| Q |
318 |
acaagcctaaataaaaatcacttaggaacacaaacataacaacacatatcatttaattatttcaaattaccacattattaaattgttttctatttcacct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32549515 |
acaagcctaaataaaaatcacttaggaacacaaacataacaacacatatcatttaattatttcaaattaccacattattaaattgttttctatttcacct |
32549614 |
T |
|
| Q |
418 |
ttttcaagttgtgagtgtgcccaaatgatttatatttggggttgtgactacataagtgttccttagcaaatgcagaaaggtgacttgggtgagagtgtat |
517 |
Q |
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| T |
32549615 |
ttttcaagttgtgagtgtgcccaaatgatttatatttagggttgtgactacataagtgttccttagcaaatgaagaaaggtgacttgggtgagagtgtat |
32549714 |
T |
|
| Q |
518 |
actgtccctctgaaatagcttctacttaatggcacagtaataca |
561 |
Q |
| |
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| T |
32549715 |
actgtccctctgaaatagcttctacttaatggcacagtaataca |
32549758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 480
Target Start/End: Original strand, 29209311 - 29209448
Alignment:
| Q |
346 |
cacaaacataacaacacatatcatttaattatttcaaattaccacattattaaattgttttctatttcacctttttcaagt---tgtgagtgtgcccaaa |
442 |
Q |
| |
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|||| ||||||||| ||| || |||||||||||||||| ||||| ||||||| |||||||||| | |||||||| | ||||| |||| ||||| |
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| T |
29209311 |
cacacacataacaatacacattatttaattatttcaaaaataaacatttttaaattcttttctattttatatttttcaattttgtgtgaatgtgtccaaa |
29209410 |
T |
|
| Q |
443 |
tgatttatatttggggttgtgactacataagtgttcct |
480 |
Q |
| |
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| T |
29209411 |
taatttatatttagggttgtgacaacaaaaatgttcct |
29209448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 476
Target Start/End: Original strand, 29211847 - 29212026
Alignment:
| Q |
300 |
agaaatacttacatggttacaagcctaaataaaaatcacttaggaacacaaacataacaacacatatcatttaattattt----caaattaccacattat |
395 |
Q |
| |
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|||||||||| || || ||||||||||| |||||| | ||||| ||||| |||||||| |||||| |||||||||||| |||| || ||| | |
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| T |
29211847 |
agaaatacttgtatagtcacaagcctaaa-aaaaattatttaggcacaca--cataacaatacatattatttaattatttatttcaaaaatacatatttt |
29211943 |
T |
|
| Q |
396 |
taaattgttttctatttcacctttttcaagt--tgtgagtgtgcccaaatgatttatatttggggttgtgactacataagtgt |
476 |
Q |
| |
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|| ||| |||||||||| ||||||||||| | |||||||||| |||||| ||| |||||| |||||| ||| ||| |||||| |
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| T |
29211944 |
tagattcttttctattttacctttttcaatttgtgtgagtgtgtccaaataattcatatttagggttgagacaacacaagtgt |
29212026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 465
Target Start/End: Complemental strand, 21992872 - 21992709
Alignment:
| Q |
302 |
aaatacttacatggttacaagcctaaataaaaatcacttaggaacacaaacataacaacacatatcatttaattatttcaaattaccacattattaaatt |
401 |
Q |
| |
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||||||||| ||| | |||||| ||||||||| | ||||||||||| |||||||| |||| | ||||||||| | ||| |||||||||||||| |
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| T |
21992872 |
aaatacttatatgatcacaagcttaaataaaaccaatttaggaacaca--cataacaatacattttatttaattaagtgaaaaatacacattattaaatt |
21992775 |
T |
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| Q |
402 |
gttttctatttcacctttttcaagttgtg--agtgtgcccaaatgatttatatttggggttgtgac |
465 |
Q |
| |
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||||| |||| |||||||| |||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
21992774 |
gttttatattgtaccttttttaagttgtgtgagtgtgcctaaatgaattatatttggggttgtgac |
21992709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 463
Target Start/End: Complemental strand, 38516089 - 38516055
Alignment:
| Q |
429 |
tgagtgtgcccaaatgatttatatttggggttgtg |
463 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |
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| T |
38516089 |
tgagtgtgcccaaatgatttatatttggtgttgtg |
38516055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 21179257 - 21179293
Alignment:
| Q |
391 |
attattaaattgttttctatttcacctttttcaagtt |
427 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
21179257 |
attattaaattgttttctatcgcacctttttcaagtt |
21179293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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