View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20156_high_2 (Length: 449)
Name: NF20156_high_2
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 11584680 - 11585101
Alignment:
| Q |
14 |
acctgtgtatccccttatacaaagcgactttagttgataagtgacgcaccaacacggctccctcaattgccaaaacaagactccaggatacggtaaacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11584680 |
acctgtgtatccccttatacaaagcgactttagttgataagtgacgcaccaacatggctccctcaattgccaaaacaagactccagggtacggtaaacaa |
11584779 |
T |
|
| Q |
114 |
tcattctcattctgatcactcgtcccacgatcactcgtcccaccattgcaatccatattgacctagagcatatatgataaaccatgtcaaggaatgtatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584780 |
tcattctcattctgatcactcgtcccacgatcactcgtcccaccattgcaatccatattgacctagagcatatatgataaaccatgtcaaggaatgtatt |
11584879 |
T |
|
| Q |
214 |
taagtatactttaaactgtggtaacctcacaataaaatataactatttcgactacaataatattcttgatactaatg--nnnnnnntattgatatcatga |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11584880 |
taagtatactttaaactggggtaacctcacaataaaatataactatttcgactacaataatattcttgatactaatgaaaaaaaaatattgatatcatga |
11584979 |
T |
|
| Q |
312 |
tcacaataaccattgcacgctgtttttaaagctcattcaattaaacccatataatatgaaataaagattcccaagcacacctgattgttgatttgcagat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11584980 |
ccacaataaccattgcacgctgtttttaaagctgattcaattaaacacatataatatgaaataaagatttccaagcacacctgattgttgatttgcagat |
11585079 |
T |
|
| Q |
412 |
tctttagtcggtcgcaagattt |
433 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
11585080 |
tctttagtcggtggcaagattt |
11585101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 30373783 - 30373666
Alignment:
| Q |
14 |
acctgtgtatccccttatacaaagcgactttagttgataagtgacgcaccaacacggctccctcaattgccaaaacaagactccaggatacggtaaacaa |
113 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||| |||| |||| ||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
30373783 |
acctgtatatccccttatacaaagagactttagttggtaaatgacacaccgacatggctcccttttttcccaaaacaagactccaggatacggtaaacaa |
30373684 |
T |
|
| Q |
114 |
tcattctcattctgatca |
131 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
30373683 |
gcattgtcattctgatca |
30373666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University