View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_high_7 (Length: 278)
Name: NF20156_high_7
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5148669 - 5148392
Alignment:
| Q |
1 |
tacgatcataaaacggttagctaaaatatcatctttacacaca--tatcattttaaaatcattttggannnnnnnnnnn--agagaaaatcatttcggat |
96 |
Q |
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| T |
5148669 |
tacgatcataaaacggttagctaaaatatcatctttacacacacatatcattttaaaatcattttggattttttttttttgagagaaaatcatttcggat |
5148570 |
T |
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| Q |
97 |
tttgaagaggtcatgaccttcctatg-----------------ccctgcatacaatgtaaatgtgtgaattcgactcttgtggtcactataaaaacttat |
179 |
Q |
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| T |
5148569 |
tttgaagaggtcatgaccttcctatgtcctacgatagctccgcccctgcatacaatgtaaatgtgtgaattcgactgttgtggtcactataaaaacttat |
5148470 |
T |
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| Q |
180 |
tgatgcatgcatgatatatataaatacctttgttagaactatctaaactcacctgaatttgttctgtaaaaagtatagtc |
259 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148469 |
tgatgcatgcatgata--tataaatacctttgttagagctatctaaactcacctgaatttgttctgtaaaaagtatagtc |
5148392 |
T |
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