View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_low_13 (Length: 210)
Name: NF20156_low_13
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_13 |
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| [»] chr5 (6 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 37835494 - 37835285
Alignment:
| Q |
1 |
tgattatagtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtca |
100 |
Q |
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| T |
37835494 |
tgattatagtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggaggaataaaagtccagtgtgtca |
37835395 |
T |
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| Q |
101 |
tgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagt |
200 |
Q |
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| T |
37835394 |
tgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagt |
37835295 |
T |
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| Q |
201 |
tctagtcatt |
210 |
Q |
| |
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|||||||||| |
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| T |
37835294 |
tctagtcatt |
37835285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 37841108 - 37840907
Alignment:
| Q |
9 |
gtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtcatgagtgac |
108 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || ||||| |||| ||||| | |||| ||| ||| |||||||| |||| ||||||| |
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| T |
37841108 |
gtcacattgaacaccaacccatgagcatggaattgaatcagaagctttccaactagagttgatgagaggaggaacaaaggtccagtgagtcaagagtgac |
37841009 |
T |
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| Q |
109 |
aacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagttctagtca |
208 |
Q |
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| T |
37841008 |
aacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctactactacaacaaattctagtca |
37840909 |
T |
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| Q |
209 |
tt |
210 |
Q |
| |
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|| |
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| T |
37840908 |
tt |
37840907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 37848864 - 37848670
Alignment:
| Q |
9 |
gtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtcatgagtgac |
108 |
Q |
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||||||| ||||||||||||||||||||||| | |||||||| | ||||||| |||| | ||| | |||| ||| || ||||||| ||||||||||||| |
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| T |
37848864 |
gtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagtgac |
37848765 |
T |
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| Q |
109 |
aacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagttct |
203 |
Q |
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| T |
37848764 |
aacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaatagtcaacaagtgtgtgataattctactgctatagctagttct |
37848670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 37829785 - 37829581
Alignment:
| Q |
9 |
gtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtcatgagtgac |
108 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||||| | ||| ||| ||| ||||| |||||| ||||||| |
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| T |
37829785 |
gtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaaggtccaacgtgtcaagagtgac |
37829686 |
T |
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| Q |
109 |
aacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataat---caacaagagtgtaatgaatttactgctacaactagttctag |
205 |
Q |
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| || |||| |||||||||||||||| | ||| || |||||||||||||| |||||||| ||| || | |||||||||||||||| |||||| |
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| T |
37829685 |
atcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattgtgataattttactgctacaactaattctag |
37829586 |
T |
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| Q |
206 |
tcatt |
210 |
Q |
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||||| |
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| T |
37829585 |
tcatt |
37829581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 35025714 - 35025783
Alignment:
| Q |
88 |
gtccagtgtgtcatgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaagg |
157 |
Q |
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| T |
35025714 |
gtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg |
35025783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 37821401 - 37821339
Alignment:
| Q |
151 |
aagaaggaaataatc---aacaagagtgtaatgaatttactgctacaactagttctagtcatt |
210 |
Q |
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| T |
37821401 |
aagaaggaaataatcgacaacaagattgtgataattttactgctacaactaattctagtcatt |
37821339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 12281494 - 12281291
Alignment:
| Q |
7 |
tagtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtcatgagtg |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| || |
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| T |
12281494 |
tagtcacattaaacaccaacccatgagcatggagttgaatcagaggcattccaggtggatttgataaaaggaggaataaaagtccagtgtgtcatgaatg |
12281395 |
T |
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| Q |
107 |
acaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagttctagt |
206 |
Q |
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| T |
12281394 |
acaacagtatcaacccattagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaggagtgtaatgaatttactgctacgactagttctaat |
12281295 |
T |
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| Q |
207 |
catt |
210 |
Q |
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|||| |
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| T |
12281294 |
catt |
12281291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 36864246 - 36864093
Alignment:
| Q |
13 |
cattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggacgaataaaagtccagtgtgtcatgagtgacaaca |
112 |
Q |
| |
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||||||||||||| |||||| |||||| |||||||| || |||||| |||| ||||| | |||| ||| ||| |||||||| |||| ||||||||||| |
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| T |
36864246 |
cattgaacaccaaaccatgaacatggatcggaatcagaagccttccagctagagttgatgagaggaggaacaaaggtccagtgagtcaagagtgacaaca |
36864147 |
T |
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| Q |
113 |
gtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatca |
166 |
Q |
| |
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||||||||| |||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
36864146 |
aagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
36864093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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