View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_low_3 (Length: 422)
Name: NF20156_low_3
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 10969228 - 10968824
Alignment:
| Q |
19 |
tatagtcctagcttctttagtatcaaaaatgtcatctaaacacttttaaatgaatttttatggaaaagggtgatttcacaaatattttgtaatttgttac |
118 |
Q |
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| T |
10969228 |
tatagtcctagcttctttagtatcaaaaatgtcatctaaacacttttaaatgaatttttatggaaaagggtgatatcacaaatattt-gtaatttgttac |
10969130 |
T |
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| Q |
119 |
gataaaaaa-tcaaagaacaaacatgtaacnnnnnnn-taagttaaaggagtccaagatattcaaatacaaatttctacaccattaccaatccacaaatc |
216 |
Q |
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| T |
10969129 |
gataaaaaaatcaaagaacaaacttgtaacaacaaaaataagttaaaggagtccaagatattcaaatacaaatttctacaccattaccaatccacaaatc |
10969030 |
T |
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| Q |
217 |
ctaccgaggtatttgaatcacaatttctaaaccannnnnnnattcttaaatttaatattttttagacaataaaacaacttgtgattggggcaaacaatat |
316 |
Q |
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| T |
10969029 |
ctaccgaggtatttgaatcacaatttctaaaccatttttttattcttaaatttaatattttttagacaataaaacaacttgtgattggggcaaacaatat |
10968930 |
T |
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| Q |
317 |
ccctataacattacaatcttttgttaatcaattcgccatactaggttgcttcttctgcttccacaactgtgccagattattcaaagcaacaagtgaactt |
416 |
Q |
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| T |
10968929 |
ccctataacattacaatcttttgttaatcaattcgccatactaggttgcttcttctgcttccacaactgtgccagattattcaaagcaacaagtgaactt |
10968830 |
T |
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| Q |
417 |
ccacct |
422 |
Q |
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| T |
10968829 |
ccacct |
10968824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 10982827 - 10982774
Alignment:
| Q |
369 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccacct |
422 |
Q |
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| T |
10982827 |
ttctgcttccacaactgagccaacttattcaaagcgacaagggaacttccacct |
10982774 |
T |
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