View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_low_4 (Length: 420)
Name: NF20156_low_4
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 10599401 - 10599710
Alignment:
| Q |
15 |
aagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaacaacaatcatgtatgcaccatgcttaactcttcgagcttcgaccagc |
114 |
Q |
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| T |
10599401 |
aagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaccaacaatcatgtatgcaccatgcttaactcttcgagcttcgaccagc |
10599500 |
T |
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| Q |
115 |
ctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccaccgattgccgcaatcgtcaatgaccttgataa |
214 |
Q |
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| T |
10599501 |
ctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccaccgattgcagcaatcgtcaatgaccttgataa |
10599600 |
T |
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| Q |
215 |
tggtcgttttcttttccaacgtcagctcacaaaattgcttgttctcgagcatctnnnnnnnnntgacattaccggttagtgtttgtttataaattaataa |
314 |
Q |
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| T |
10599601 |
tggtcgttttcttttccaacgtcagctcacgaaattgcttgttctcgagcatctaaaaaaaaaagacattaacggttag----tgtttataaattaataa |
10599696 |
T |
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| Q |
315 |
ccatgatataagat |
328 |
Q |
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|||||||||||||| |
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| T |
10599697 |
ccatgatataagat |
10599710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 325 - 411
Target Start/End: Original strand, 10599742 - 10599830
Alignment:
| Q |
325 |
agattcaacatcatcagctgacaaatgaaattgttagcat--aagacatatatataacacatgtcatgttggaaagagagtagaataat |
411 |
Q |
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| T |
10599742 |
agattcaacatcatcagctgacaaatgaaattgttagcataaaacacatatatataacacatgtcacgttggaaagagagtagaataat |
10599830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 6254862 - 6254609
Alignment:
| Q |
15 |
aagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaacaacaatcatgtatgcaccatgcttaactcttcgagcttcgaccagc |
114 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6254862 |
aagacatttaagacttaggtaaagagtgatgttgtttccagccgttggagcacgaacaatcatgtatgcaccatgcttaactcttcgaccttcgaccagc |
6254763 |
T |
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| Q |
115 |
ctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccaccgattgccgcaatcgtcaatgaccttgataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
6254762 |
ctcttccactgacctccaaccttaaattgtttttcaggcagagattagtaaacatcaatacagtctcaccgattgccgcaatcgtcaatgaccatgataa |
6254663 |
T |
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| Q |
215 |
tggtcgttttcttttccaacgtcagctcacaaaattgcttgttctcgagcatct |
268 |
Q |
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||||||| ||| |||||||| ||||||||||||||||||||| || |||||||| |
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| T |
6254662 |
tggtcgtcttcctttccaacatcagctcacaaaattgcttgtcctggagcatct |
6254609 |
T |
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