View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_low_5 (Length: 358)
Name: NF20156_low_5
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 29313724 - 29314065
Alignment:
| Q |
17 |
attaaaacattgctttagaggacaagtaatccctacaattcatgctattttatcttttggagtcaattttaagacatcaaagttaccctaaaaaagaagt |
116 |
Q |
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| T |
29313724 |
attaatacattgctttagaggacaagtaatccctacaattcatgctattttatcttttggagtcaattttaagacatcaaagttacccaaaaaaagaagt |
29313823 |
T |
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| Q |
117 |
ttcttacctccagtgtagacatcaccggttggagaccagtcctttggctcgtagatagggctgcataataaaacaggaaaattacattttgatttttgaa |
216 |
Q |
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| T |
29313824 |
ttcttacctccagtgtagacatcaccggttggagaccagtcctttggctcgtagatagggctgcataataaaacaggaaaattacattttgatttttgaa |
29313923 |
T |
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| Q |
217 |
taagtaggtcaaagtctatataattgaatgaaaatagttactaaattaaaatcaatttccataacatgagagacattagttacttaattaaattgaactc |
316 |
Q |
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| T |
29313924 |
taagtaggtcaaagtctatataattgaatgaaaatagttactaaattaaaatcaatatccataacatgagagacattacttacttaattaaattgaactc |
29314023 |
T |
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| Q |
317 |
caattannnnnnnatatgtatgagctactagagtatcagacc |
358 |
Q |
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| T |
29314024 |
caattatttttttatatgtatgagctactagagtatcagacc |
29314065 |
T |
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