View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20156_low_6 (Length: 320)
Name: NF20156_low_6
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 37565436 - 37565117
Alignment:
| Q |
1 |
aacatgtattatttagtgtatatttgattccaccgtgataccaaatatatcaacctaatttaaagtcatagtaaaagtggtttaaaaaccaagagaaaga |
100 |
Q |
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| T |
37565436 |
aacatgtattatttagtgtatatttgattccaccgtgataccaaatatatcaacctaatttaaagtcatagtaaaagtggtttaaaaaccaagagaaaga |
37565337 |
T |
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| Q |
101 |
aatgtcaaagcctggatagtggattcattgtgtggccattggccatgcaattttcaagttgagtattgataaataatgaaatgctgcaaaattaaactag |
200 |
Q |
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| T |
37565336 |
aatgtcaaagcctggatagtggattcattgtgtggccattggccatgcaattttcaagttgagtattgataaataatgaaatgctgcaaaattaaactag |
37565237 |
T |
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| Q |
201 |
atctttaaattcactgtccaatacattgcatgagcatggatttgtttaagctaattgatttagcgcatgtttgttttgacggtggatacccatcaaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37565236 |
ctctttaaattcactgtccaatacattgcatgagcatggatttgtttaagctaattgatttagcgtgtgtttgttttgacggtggatacccatcaaatgt |
37565137 |
T |
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| Q |
301 |
aggtattttcttactcttta |
320 |
Q |
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||||||||||| |||||||| |
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| T |
37565136 |
aggtattttctaactcttta |
37565117 |
T |
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