View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20156_low_9 (Length: 250)
Name: NF20156_low_9
Description: NF20156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20156_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 37564999 - 37564858
Alignment:
| Q |
1 |
tcacgataatctactgtgattttcaaaagctacactctgcaaaatcatgatgagtcactatgaatctaacatatccactctaatatcaaacacacgctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37564999 |
tcacgataatctactgtgattttcaaaagctacactctgcaaaattatgatgagtcactatgaatctaacatatccactctaataccaaacacacgctta |
37564900 |
T |
|
| Q |
101 |
atacattcaaacctaaatgcggaagaaagaacggtgtgaccc |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564899 |
atacattcaaacctaaatgcggaagaaagaacggtgtgaccc |
37564858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University