View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20157_high_11 (Length: 247)
Name: NF20157_high_11
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9612804 - 9613018
Alignment:
| Q |
18 |
ataggcagcagaggcaccagtggacatttgaaacctgaaaacaaaattaattaagagttatttttatttcaatatccatggactaatgactttttatttt |
117 |
Q |
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| T |
9612804 |
ataggcagaagaggcaccagtggacatttgaaacctgaaaacaaaattaattaagagttatttttatttcaatatccatggactaatgattttttatttt |
9612903 |
T |
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| Q |
118 |
gtggcaattccaatcttacaaatatcatgatagcaatgtgtatattaataccataaaaaatgtaaaccatacctccagagtgaccaaagttgtgtctttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
9612904 |
gtggcaattccaatcttacaaatatcatgatagcaatgtgtatattaataccataaaaaatgtaaatcatacctccagtgcttccaaagttgtgtctttc |
9613003 |
T |
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| Q |
218 |
atcatcttgatctat |
232 |
Q |
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||||||||||||||| |
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| T |
9613004 |
atcatcttgatctat |
9613018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9638235 - 9638467
Alignment:
| Q |
18 |
ataggcagcagaggcaccagtggacatttgaaacctgaaaacaaaattaattaagagttatttttatttcaatatccatggactaatgactttttatttt |
117 |
Q |
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| T |
9638235 |
ataggcagtagaggcaccagtggacatgtgaaacctgaaaacaaatt--agtaagagttacttttaattcaatacaattggactaatgattttttatttt |
9638332 |
T |
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| Q |
118 |
gtggcaattc-----caatcttacaaatatcatgat------------agcaatgtgtatattaat---accataaaaaatgtaaaccatacctccagag |
197 |
Q |
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| T |
9638333 |
gtagcaattcaactccaatactacaaatatcgttatgtagaaattcaaagcaatgtgtatattaattataccataaaaaatgtaaaccatacctccagag |
9638432 |
T |
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| Q |
198 |
tgaccaaagttgtgtctttcatcatcttgatctat |
232 |
Q |
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| T |
9638433 |
tgtccaaagttgtgtctttcatcatcttgatctat |
9638467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9626235 - 9626464
Alignment:
| Q |
18 |
ataggcagcagaggcaccagtggacatttgaaacctgaaaacaaaattaattaagagttatttttatttcaatatccatggactaatgactttttatttt |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||||| |||| |||||||||| |
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| T |
9626235 |
ataggcagcagaggcacaagtggacatttgaaacctgaaaac-aaattaattaa-agttacttttatttcaataccaatggactcatgattttttatttt |
9626332 |
T |
|
| Q |
118 |
gtggcaattccaatcttacaaatatcatgat------------agcaatgtgtatatta---ataccataaaaaa-tgtaaac-catacctccagagtga |
200 |
Q |
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|| |||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||| |||| || |
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| T |
9626333 |
gtaaaaattccaatcctacaaacatcatgatgcagaaattcaaagcaatgtgtatattaactataccataaaaaattgtaaacacataccttcagaatgt |
9626432 |
T |
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| Q |
201 |
ccaaagttgtgtctttcatcatcttgatctat |
232 |
Q |
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|||||| |||||||| ||| |||||||||||| |
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| T |
9626433 |
ccaaagctgtgtcttgcattatcttgatctat |
9626464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 9647457 - 9647524
Alignment:
| Q |
166 |
taccataaa-aaatgtaaaccatacctccagagtgaccaaagttgtgtctttcatcatcttgatctat |
232 |
Q |
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||||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
9647457 |
taccataaataaatgtaaaccatacctccagtgtttccaaagttgtgtcttgcatcatcttgatctat |
9647524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 9653474 - 9653541
Alignment:
| Q |
166 |
taccataaa-aaatgtaaaccatacctccagagtgaccaaagttgtgtctttcatcatcttgatctat |
232 |
Q |
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||||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
9653474 |
taccataaataaatgtaaaccatacctccagtgtttccaaagttgtgtcttgcatcatcttgatctat |
9653541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 33645825 - 33645781
Alignment:
| Q |
185 |
catacctccagagtgaccaaagttgtgtctttcatcatcttgatc |
229 |
Q |
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||||||||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
33645825 |
catacctccagagtgaccaaagtcgtgccttgcatcatcttgatc |
33645781 |
T |
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