View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20157_high_12 (Length: 227)

Name: NF20157_high_12
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20157_high_12
NF20157_high_12
[»] chr2 (1 HSPs)
chr2 (1-227)||(13652927-13653139)
[»] scaffold0017 (1 HSPs)
scaffold0017 (86-225)||(39244-39383)
[»] chr7 (1 HSPs)
chr7 (86-225)||(26645403-26645542)
[»] chr4 (2 HSPs)
chr4 (86-225)||(51030813-51030952)
chr4 (169-213)||(31420730-31420773)
[»] chr6 (3 HSPs)
chr6 (89-225)||(13549020-13549156)
chr6 (86-225)||(31876294-31876433)
chr6 (86-200)||(7457665-7457782)
[»] chr8 (1 HSPs)
chr8 (86-217)||(21350032-21350163)
[»] chr3 (2 HSPs)
chr3 (128-225)||(6079133-6079230)
chr3 (179-225)||(11028769-11028815)
[»] chr1 (1 HSPs)
chr1 (1-41)||(19190478-19190518)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13652927 - 13653139
Alignment:
Q  1 acacaaagcaaatatcaaataagtccaaaggtacaatgcacnnnnnnnttgggtctttatttatagttatatatggnnnnnnnntaccaaaaccaaatta 100  Q
    ||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||        ||||||||||||||||    
T  13652927 acacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatatatggaaaaaaa-taccaaaaccaaatta 13653025  T
Q  101 ttttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaataaaattaattgtaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||             |||||  |||||||||||||||||||||||||||||||||    
T  13653026 ttttctttgaaatcaaaatataagacatgttcatcatatctatttac-------------tttctccaaaagaaatggagagaataaaattaattgtaga 13653112  T
Q  201 aacagaataagaaaatattttaactta 227  Q
    |||||||||||||||||||||||||||    
T  13653113 aacagaataagaaaatattttaactta 13653139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 39244 - 39383
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaat 185  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||| |||||||||| |||||||    
T  39244 accaaaatcaaattattttctttgaaatcaaaatataagatatgttcatcatctctatttacatcacactttcaatttctacaaaagaaatgaagagaat 39343  T
Q  186 aaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  39344 aaaattaactgtagaaacagaataagaaaatattttaact 39383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 26645542 - 26645403
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaat 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||    
T  26645542 accaaaaccaaatcattttctttgaaatcaaaatataagacatattcatcatctctatttacatcacactctcattgtctacaaaagaaatggagagaat 26645443  T
Q  186 aaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  26645442 aaaattaattgtagaaacagaataagaaaacattttaact 26645403  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 51030813 - 51030952
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaat 185  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||| ||||||||||||||||||    
T  51030813 accaagaccaaatcattttctttgaaatcaaaatataagacatattcatcatctctacttacatcacactctcattgtctacaaaagaaatggagagaat 51030912  T
Q  186 aaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  51030913 aaaattaattgtagaaacagaataagaaaacattttaact 51030952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 31420773 - 31420730
Alignment:
Q  169 aaagaaatggagagaataaaattaattgtagaaacagaataagaa 213  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||    
T  31420773 aaagaaatgg-gagaataaaattaattgtaaaaacataataagaa 31420730  T

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Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 13549020 - 13549156
Alignment:
Q  89 aaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaataaa 188  Q
    ||||||||||||||||||| ||||||||||||||||| || ||| |||| ||||||||||| |||||||| ||||||| |||||||||| ||||||||||    
T  13549020 aaaaccaaattattttcttcgaaatcaaaatataagaaatattcttcatctctatttacatcacactttccttttctacaaaagaaatgaagagaataaa 13549119  T
Q  189 attaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||||||||| ||||||||||||||||||||    
T  13549120 attaattgtagaaacaaaataagaaaatattttaact 13549156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 31876433 - 31876294
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaat 185  Q
    ||||||||||||| ||||| |||||||| |||| |||||||||||||||||| |||| |||||| ||||| ||||| |||| |||||||||| |||||||    
T  31876433 accaaaaccaaatcattttgtttgaaataaaaaaataagacatgttcatcatctctacttacatcacactctcattatctacaaaagaaatgaagagaat 31876334  T
Q  186 aaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  31876333 aaaattaattgtagaaacagaataagaaaacattttaact 31876294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 7457665 - 7457782
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaata---taagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagag 182  Q
    ||||||||||||| ||||| |||||||| |||| |   ||||||||||||||||| |||| |||||| ||||| ||||| |||| |||| ||||| ||||    
T  7457665 accaaaaccaaatcattttgtttgaaataaaaaaaaaataagacatgttcatcatctctacttacatcacactctcattatctacaaaataaatgaagag 7457764  T
Q  183 aataaaattaattgtaga 200  Q
    ||||||||||||||||||    
T  7457765 aataaaattaattgtaga 7457782  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 21350032 - 21350163
Alignment:
Q  86 accaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| || | |||||||||||| |||||    
T  21350032 accaaaaccaaattattttctttgaaatcaaaatataagacatgtacatcatctctatttacatcacactctcattgtcaacaaaagaaatggaaagaat 21350131  T
Q  186 aaaattaattgtagaaacagaataagaaaata 217  Q
    | |||||||| |||||||| ||||||||||||    
T  21350132 ataattaattttagaaacaaaataagaaaata 21350163  T

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Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 6079230 - 6079133
Alignment:
Q  128 tgttcatcatatctatttacataacactttcattttctataaaagaaatggagagaataaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6079230 tgttcatcatctctatttacatcacactttcattttctacaaaagaaatgaagagaataaaattaattgtagaaacagaataagaaaatattttaact 6079133  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 11028769 - 11028815
Alignment:
Q  179 agagaataaaattaattgtagaaacagaataagaaaatattttaact 225  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  11028769 agagaataaaattaattgtagaaacataataagaaaatattttaact 11028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19190518 - 19190478
Alignment:
Q  1 acacaaagcaaatatcaaataagtccaaaggtacaatgcac 41  Q
    ||||||||||||||||||||||||||| | |||||| ||||    
T  19190518 acacaaagcaaatatcaaataagtccagatgtacaaagcac 19190478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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