View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20157_high_9 (Length: 255)
Name: NF20157_high_9
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5027484 - 5027245
Alignment:
| Q |
1 |
tcgattttcaaaatgtaagactcatcttgatttatgccaataaaaaagtgagttttgaaaagagagtgatactagcactacatcctttagtatataagct |
100 |
Q |
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| T |
5027484 |
tcgattttcaaaatgtgagactcatcttgatttaagccaataaaaaagtgagtgttgaaaagagagtgatgctagcactaaatcctttagtatataagct |
5027385 |
T |
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| Q |
101 |
ataatctgcaaagtattttgtataattcttttgtaaaattttgaaagtgacccttttgccccattgtatatgtatgtgtatgtgttatattttttccaat |
200 |
Q |
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| T |
5027384 |
ataatctgcaaagtattttgaataattcttttgtaaaattttgatagtgacccttttgccccattgtatatgcatgtggatgtgttata--ttttccaat |
5027287 |
T |
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| Q |
201 |
tgttgaa---tcttaacttgatcctttaccatccgcattcat |
239 |
Q |
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||||||| | |||||||||||||||||||||||||||||| |
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| T |
5027286 |
tgttgaatattattaacttgatcctttaccatccgcattcat |
5027245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 24845515 - 24845451
Alignment:
| Q |
4 |
attttcaaaatgtaagactcatcttgatttatgccaataaaaaagtgagttttgaaaagagagtg |
68 |
Q |
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|||| |||| ||| ||||||| | ||||||| |||||| | ||||||||| |||||||||||||| |
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| T |
24845515 |
atttccaaagtgtgagactcaccatgatttaagccaattagaaagtgagtgttgaaaagagagtg |
24845451 |
T |
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