View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20157_low_1 (Length: 691)
Name: NF20157_low_1
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 113 - 501
Target Start/End: Complemental strand, 32065312 - 32064915
Alignment:
| Q |
113 |
aaatctaggcttttcttattacttattagggaccttaatatcacccacatgagtaatattttgaactctagtaagtgtttgaagatcataagcaatccaa |
212 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32065312 |
aaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcataagctatccaa |
32065213 |
T |
|
| Q |
213 |
caccttgagttatccttgtggtagaaatacccatcaca------atcattggtacatttgtttccacatgtatcttcacttactctatcaccagtagtgt |
306 |
Q |
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|||||||| | |||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
32065212 |
caccttgattcatccttatggtagaaatacccaacacacttacaatcattggtacatttgtttccacatgcatcttcacttactatatcaccactagtgt |
32065113 |
T |
|
| Q |
307 |
atttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatac---tcctaaaggcttagcattacacttattgctcca |
403 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
32065112 |
atttgttcatgtaatgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagggctacacttattactcca |
32065013 |
T |
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| Q |
404 |
agcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaagtccaaattttccacatctctctggcaattgacactcactctcat |
501 |
Q |
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| T |
32065012 |
accaaatattccattctccaatggacaaccaaaacattgattatcctcacaaagcccaaattccccacatctctctggcaattgacactcactctcat |
32064915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 101 - 487
Target Start/End: Complemental strand, 32032184 - 32031789
Alignment:
| Q |
101 |
cttcccaaagagaaatctaggcttttcttattacttattagggaccttaatatcacccacatgagtaatattttgaactctagtaagtgtttgaagatca |
200 |
Q |
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| T |
32032184 |
cttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatca |
32032085 |
T |
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| Q |
201 |
taagcaatccaacaccttgagttatccttgtggtagaaatacccatcaca------atcattggtacatttgtttccacatgtatcttcacttactctat |
294 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
32032084 |
taagctttccaacaccttgagttatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactat |
32031985 |
T |
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| Q |
295 |
caccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatac---tcctaaaggcttagcattaca |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32031984 |
caccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctcctaaaggcttagcattaca |
32031885 |
T |
|
| Q |
392 |
cttattgctccaagcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaagtccaaattttccacatctctctggcaattg |
487 |
Q |
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| T |
32031884 |
tttattactccaaccaaatattccattctccaatggacaaccaacacattgattatcctcacaaagcccaaatttcccacatctctcaggcaattg |
32031789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 284 - 547
Target Start/End: Complemental strand, 32072458 - 32072195
Alignment:
| Q |
284 |
acttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctaaaggctta |
383 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaactcacttgctttgcatactactacaggctta |
32072359 |
T |
|
| Q |
384 |
gcattacacttattgctccaagcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaagtccaaattttccacatctctctggca |
483 |
Q |
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| T |
32072358 |
gcactacaattattgctcgaacttaagattccattctccaaaggacaaccaacacattgattatcctcacaaagcccaaattttccacatctctttggca |
32072259 |
T |
|
| Q |
484 |
attgacactcactctcataaaaaattctatcaaagagagtgtacataacttgccaaacaccatc |
547 |
Q |
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||||||| |||||||||| |||| |||||||||||||||||| | |||| |||||||||||| |
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| T |
32072258 |
attgacattcactctcatcaaaatctctatcaaagagagtgtatgtcactttccaaacaccatc |
32072195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 559 - 673
Target Start/End: Complemental strand, 32075798 - 32075682
Alignment:
| Q |
559 |
gaaaaatcactatcaccgagagtaagacatatgctactatgatatcttcttatttgcctaattggttgagtctggcaa--nnnnnnnctatttttgggtc |
656 |
Q |
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| T |
32075798 |
gaaaaatcaatatcgccgagagtaagacagatgctactatgatatcttcttatttgtctaattggttgagtctggcaatttttttttctatttttgggtc |
32075699 |
T |
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| Q |
657 |
aaagagtaggatacctg |
673 |
Q |
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||||||||||||||||| |
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| T |
32075698 |
aaagagtaggatacctg |
32075682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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