View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20157_low_10 (Length: 249)
Name: NF20157_low_10
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 12274267 - 12274111
Alignment:
| Q |
22 |
gaaagtagaaaacacggaaaaggacttgaacattctatgcaggcggttgacaatagtctcc-aaaagtcctagttacaccaaccatcgcttctttcgctc |
120 |
Q |
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| T |
12274267 |
gaaagtagaaaacacggaaaaggacttgaacattctatgcaggcggttgacaatagtctcccaaaagtcctagttacaccaaccatcgcttctttcgctc |
12274168 |
T |
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| Q |
121 |
aaatgttcctctgttaacacgaaagagagtgtgtcattcatctctgtgaaacacaacaa |
179 |
Q |
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| T |
12274167 |
aaatgttcctctgttaacacgaa--agagtgtgtcattcatctctgtgaaacacaacaa |
12274111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 12274112 - 12274078
Alignment:
| Q |
196 |
aagacaggttcgttcaaataattgttacagccatg |
230 |
Q |
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| T |
12274112 |
aagacaggttcgttcaaataattgttatagccatg |
12274078 |
T |
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