View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20157_low_2 (Length: 605)
Name: NF20157_low_2
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 33182988 - 33183569
Alignment:
| Q |
18 |
tctaacaaatgagtaggctcaggtgaaacaagaaaagaatcagcacaatcaaccataccaaagctgctagattcaatccttggtggcataagtgaatcac |
117 |
Q |
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| T |
33182988 |
tctaacaaatgagtaggctcaggtgaaacaagaaaagaatcagcacaatcgaccataccaaagctgctagattcaatccttggtggcataagtgaatcac |
33183087 |
T |
|
| Q |
118 |
agcatccagaacaaacaaacaaaggtggaactgtctcagaatcatctattccacaacatcttgtatgctgccacacttcacaaatatcacaagccaccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183088 |
agcatccagaacaaacaaacaaaggtggaactgtctcagaatcatctattccacaacatcttgtatgctgccacacttcacaaatatcacaagccaccat |
33183187 |
T |
|
| Q |
218 |
tctctcaccatcatcatcttgtgctccacactcacacctcactttccaattatcacttcctccttgatatttcaatggagtacacaaatcaatgccaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183188 |
tctctcaccatcatcatcttgtgctccacactcacacctcactttccaattatcacttcctccttgatatttcaatggagtacacaaatcaatgccaatt |
33183287 |
T |
|
| Q |
318 |
ccccttacagaaagcttcacaccagattcaatctgtccaaaaatcacttcttcatcttctacatccatcaattctttgatatctgtcactatgagtcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183288 |
ccccttacagaaagcttcacaccagattcaatctgtccaaaaatcacttcttcatcttctacatccatcaattctttgatatctgtcactatgagtcttt |
33183387 |
T |
|
| Q |
418 |
cagctatgcaatatgtgtcccttaatgcagcctcagcagtttgctttaagtctctaactgttgcatgcaatggaacagttacaatctcaccacaagatgg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183388 |
cagctatgcaatatgtgtcccttaatgcagcctcagcagtttgctttaagtctctaactgttgcatgcaatggaacagttacaatctcaccacaagatgg |
33183487 |
T |
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| Q |
518 |
cccttttaaatcagacttattctcaacgaaattcggtttcaaatggcaaataaatgtcaaaacttgttccatttcatctctc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183488 |
cccttttaaatcagacttattctcaacgaaattcggtttcaaatggcaaataaatgtcaaaacttgttccatttcatctctc |
33183569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 17888778 - 17888836
Alignment:
| Q |
173 |
acatcttgtatgctgccacacttcacaaatatcacaagccaccattctctcaccatcat |
231 |
Q |
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|||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||||| |
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| T |
17888778 |
acatctagtatgttgccaaatttcacaaatatcacaagacaccattctctcaccatcat |
17888836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 34358948 - 34358900
Alignment:
| Q |
187 |
gccacacttcacaaatatcacaagccaccattctctcaccatcatcatc |
235 |
Q |
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||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
34358948 |
gccacacaccacacatatcacaagccatcattctctctccatcatcatc |
34358900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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