View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20157_low_4 (Length: 353)
Name: NF20157_low_4
Description: NF20157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20157_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 11349847 - 11349646
Alignment:
| Q |
67 |
caccttttgatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgggcaacaattgtatcacgacggagttgatcgaaaggttatgtaca |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11349847 |
caccttttgatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgcgcaacaattgtatcacgacggagttgattgaaaggttatgtaca |
11349748 |
T |
|
| Q |
167 |
atcaaacaccacttaactcaaaatacaaggatttgagatgcccttggcggcaatgatttggttttgattttattttcaaatataactataagtaaagatc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11349747 |
atcaaacaccacttaactcaaaatacaaggatttgagatgcccttggcggcaatgatttggttttgattttattttcaaatataactgcaagtaaagatc |
11349648 |
T |
|
| Q |
267 |
ca |
268 |
Q |
| |
|
|| |
|
|
| T |
11349647 |
ca |
11349646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 7e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 7458127 - 7457981
Alignment:
| Q |
75 |
gatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgggcaacaattgtatcacgacggagttgatcgaaaggttatgtacaatcaaaca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7458127 |
gatggtgcaaagtcttcacaaaagaaataagtggttgttcatggtcgcgcaacaattgtatcacgacggagttgatcgaaaggttatgtacaatcgaaca |
7458028 |
T |
|
| Q |
175 |
ccacttaactcaaaatacaaggatttgagatgcccttggcggcaatg |
221 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7458027 |
ccacttaactcaaaatacaaggatttgggatgcccttggcggcaatg |
7457981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 31875875 - 31876019
Alignment:
| Q |
75 |
gatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgggcaacaattgtatcacgacggagttgatcgaaaggttatgtacaatcaaaca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
31875875 |
gatggtgcaaagtcttcacaaaagaaataagttgttgttcatggtcgcgcaacaattgtatcacgacggagttgatcgaaaggttctgtacaatcgaaca |
31875974 |
T |
|
| Q |
175 |
ccacttaactcaaaatacaaggatttgagatgcccttggcggcaatg |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31875975 |
ccacttaactc--aatacaaggatttgagatgcccttggcggcaatg |
31876019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 7457681 - 7457631
Alignment:
| Q |
218 |
aatgatttggttttgattttattttcaaatataactataagtaaagatcca |
268 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457681 |
aatgatttggttttggttttattttcaaatataactataagtaaagatcca |
7457631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 31876417 - 31876467
Alignment:
| Q |
218 |
aatgatttggttttgattttattttcaaatataactataagtaaagatcca |
268 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876417 |
aatgatttggttttggttttattttcaaatataactataagtaaagatcca |
31876467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 51031362 - 51031216
Alignment:
| Q |
75 |
gatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgggcaacaattgtatcacgacggagttgatcgaaaggttatgtacaatcaaaca |
174 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51031362 |
gatggtgcaaagttttcacaaaagaaataagtggttgttcatggtcgcataacaattgtatcacgacggagttgatcgaaaggttccgtacaatcaaaca |
51031263 |
T |
|
| Q |
175 |
ccacttaactcaaaatacaaggatttgagatgcccttggcggcaatg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
51031262 |
ccacttaactcaaaatacaaggatttgagataccctcggcgacaatg |
51031216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 51030829 - 51030779
Alignment:
| Q |
218 |
aatgatttggttttgattttattttcaaatataactataagtaaagatcca |
268 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51030829 |
aatgatttggtcttggttttattttcaaatataactataagaaaagatcca |
51030779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 26645003 - 26645129
Alignment:
| Q |
75 |
gatggtgcaaagtcttcacaaaagaaataagtggctgttcatggtcgggcaacaattgtatcacgacggagttgatcgaaaggttatgtacaatcaaaca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||| ||||||||||||| |
|
|
| T |
26645003 |
gatggtgcaaagtcttcacaaaagaaataagtggttgttcatggtcgcataacaattg-at--------agttgatcgaaaggttccgtacaatcaaaca |
26645093 |
T |
|
| Q |
175 |
ccacttaactcaaaatacaaggatttgagatgccct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26645094 |
ccacttaactcaaaatacaaggatttgagataccct |
26645129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 26645526 - 26645576
Alignment:
| Q |
218 |
aatgatttggttttgattttattttcaaatataactataagtaaagatcca |
268 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26645526 |
aatgatttggttttggttttattttcaaatataactataagaaaagatcca |
26645576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University