View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20158_high_10 (Length: 349)
Name: NF20158_high_10
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_10 |
 | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
|
| [»] scaffold0320 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 7054677 - 7054380
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7054677 |
gaatgtaataaagcatgccacacttgacactccgccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
7054578 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
211 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054577 |
acccatcacatccatcagtaagccaacatgaaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
7054478 |
T |
|
| Q |
212 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7054477 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
7054380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 14462500 - 14462442
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatga |
70 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14462500 |
gaatgtaatcaagcatgccacacctgacactccgccgccagggtaccttacacctatga |
14462442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 8212236 - 8212533
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8212236 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacatcgaaaggaaagctgcacaca |
8212335 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
211 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8212336 |
acccaatacatccatcagtaagccaacatggaaagagattcattccatcctttaaatttaatatatttctctttcttttatggacattgagagtgtggtg |
8212435 |
T |
|
| Q |
212 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8212436 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaataatgctaggttttttgaatcaa |
8212533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 9290497 - 9290794
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
9290497 |
gaatgtaataaggcatgccacacttgacactccaccgccagggtaccttacaccattgacgagtctacactataaaacgttgaaaggaaagctgcacaca |
9290596 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
211 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9290597 |
acccagtacatccattagtaagccaacatggaaagagattcattccatccttttaaattaatatatttctctttcttttgtggacattgagagtgtggtg |
9290696 |
T |
|
| Q |
212 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9290697 |
tcaattgagatgatgaacacatattacactttgatggtgaactctatatttagcaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
9290794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 38980803 - 38981097
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
38980803 |
gaatgtaataaagcatgccacacttgacactccgccgccagggtaccttacacctatgacgagtctacgctataaaatgtcgaaaggaaaactgcacaca |
38980902 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
211 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38980903 |
acccagtacatccatcagtaagccaacgtggaaagagattcattccatccttttaatttaatatatttctctttcttttgttgacattgagagtgtggtg |
38981002 |
T |
|
| Q |
212 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38981003 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat |
38981097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 24867391 - 24867259
Alignment:
| Q |
177 |
tttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattc |
276 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
24867391 |
tttctctttcatttatgtacattgagagtgtggtgtcaattgagacgatgaacacgtcttacattttgatggtgaactttatatttaactatttttattt |
24867292 |
T |
|
| Q |
277 |
atgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||| |
|
|
| T |
24867291 |
atgtattgaagaacgataggtctcttgaatcaa |
24867259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 12520 - 12223
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12520 |
gaatgtaataaagcatgccacacttgacactcagccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
12421 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtg |
211 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12420 |
acccagtacatccatcagtaagccaacatgtaaagagattcattccatccttttaatttaatatatatctctttcttttgtggacattgagagtgtggtg |
12321 |
T |
|
| Q |
212 |
tcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12320 |
tcaattgagatgatgaacacatcttacactctgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttcaatcaa |
12223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 13464 - 13756
Alignment:
| Q |
16 |
gtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacacaacct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13464 |
gtaataaagcatgccacacttgacactccgccaccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacacaaccc |
13563 |
T |
|
| Q |
116 |
agtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13564 |
agtacatccatcagtaagccaacatggaaagagattcattc-atccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaa |
13662 |
T |
|
| Q |
216 |
ttgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13663 |
ttgagatgatgaacacatcttacactttgatggtgaactttatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
13756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 51424689 - 51424986
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51424689 |
gaatgtaataaagcatgtcacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgcacaca |
51424788 |
T |
|
| Q |
112 |
acctagtacatccatcagtaagccaacaatg-aaagagattcattccatcc-ttttaatttaatatatttctctttcttttgtggacattgagagtgtgg |
209 |
Q |
| |
|
||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51424789 |
acccagtacatccatcagtaagccaacatggaaaagagattcattccatcctttttaattta--atatttctatttcttttgtggacattgagagtgtgg |
51424886 |
T |
|
| Q |
210 |
tgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa |
309 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51424887 |
tgtcaattgagacgatgaacgcatcttacactttgatggtgaactctatatttaacaagtttgattcatgaattgaagaatgctaggttttttgaatcaa |
51424986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 11686658 - 11686712
Alignment:
| Q |
12 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacct |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686658 |
gaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacct |
11686712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 24999465 - 24999573
Alignment:
| Q |
197 |
attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctagg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24999465 |
attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctagg |
24999564 |
T |
|
| Q |
297 |
ttttttgaa |
305 |
Q |
| |
|
||| ||||| |
|
|
| T |
24999565 |
tttcttgaa |
24999573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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