View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_high_18 (Length: 247)
Name: NF20158_high_18
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 51301354 - 51301137
Alignment:
| Q |
11 |
gggttgataggatttatgatcccagcttcaaaagatatttactacctacacctcaatggcattaatgtagaacgtatgcagatttgtcttgtgcatgtgt |
110 |
Q |
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| T |
51301354 |
gggttgataggatttatgatcccagcttcaaaagatatttactacctacacctcaatggcattaatgtagaacgtatgcagatttgtcttgtgcatgtgt |
51301255 |
T |
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| Q |
111 |
gcacaaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccgtaagcaagttgtttgtatt |
210 |
Q |
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| T |
51301254 |
gcacaaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccataagcaagttgtttgtatt |
51301155 |
T |
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| Q |
211 |
atgtcactgatttttatt |
228 |
Q |
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|||||||||||||||||| |
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| T |
51301154 |
atgtcactgatttttatt |
51301137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44112394 - 44112170
Alignment:
| Q |
1 |
ttgaatttaggggttgataggatttatgatcccagcttcaaaagatatttactacctacacctcaatggcattaatgtagaacgtatgcagatttgtctt |
100 |
Q |
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| T |
44112394 |
ttgaatttagtagttgacaggatttatgatcccagcttcaaaagatatttactacctatacctcaatggcattaatgtagaacgtatgcagatttgcctt |
44112295 |
T |
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| Q |
101 |
gtgcatgtgtgcacaaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccgtaagcaagt |
200 |
Q |
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| T |
44112294 |
gtgcatgtgcgcacaaaggaccgtcctttgatatatatctgttgtgttttgactgtgtagaaatgattgcaaaaattgtagtattttttcataagtaagt |
44112195 |
T |
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| Q |
201 |
tgtttgtattatgtcactgattttt |
225 |
Q |
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| T |
44112194 |
tgtttgtatcatgccactgaatttt |
44112170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 50015337 - 50015113
Alignment:
| Q |
1 |
ttgaatttaggggttgataggatttatgatcccagcttcaaaagatatttactacctacacctcaatggcattaatgtagaacgtatgcagatttgtctt |
100 |
Q |
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| T |
50015337 |
ttgaatttagtagttgacaggatttatgatcccagcttcaaaagatatttactacctatacctcaatggcattaatgtagaacgtatgcagatttgcctt |
50015238 |
T |
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| Q |
101 |
gtgcatgtgtgcacaaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccgtaagcaagt |
200 |
Q |
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| T |
50015237 |
gtgcatgtgtgcacaaaggactgtcctttgatatatatctgttgtgttttgactgtgtagaaatgattgcaaaaattgtagtattttcccataagtaagt |
50015138 |
T |
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| Q |
201 |
tgtttgtattatgtcactgattttt |
225 |
Q |
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| T |
50015137 |
tgtttgtatcatgccactgaatttt |
50015113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 18853969 - 18853752
Alignment:
| Q |
14 |
ttgataggatttatgatcccagcttcaaaagatatttactac------ctacacctcaatggcattaatgtagaacgtatgcagatttgtcttgtgcatg |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||| ||||||| | |
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| T |
18853969 |
ttgataggatttatgatcccaccttcaaaagatatttactaatattatctatacctcaatggcattaatgtagaatgtgtgcagatttaccttgtgcgta |
18853870 |
T |
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| Q |
108 |
tgtgcacaaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccgtaagcaagttgtttgt |
207 |
Q |
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| T |
18853869 |
tgcacagaaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttcccataagtaagttgtttgt |
18853770 |
T |
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| Q |
208 |
attatgtcactgattttt |
225 |
Q |
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||| || |||||||||| |
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| T |
18853769 |
attgtgcaactgattttt |
18853752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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