View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_high_20 (Length: 236)
Name: NF20158_high_20
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 51301659 - 51301439
Alignment:
| Q |
14 |
caatattgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagatttattcatctattgtatgagatccttat |
113 |
Q |
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| T |
51301659 |
caatattgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagatttattcatctattgtatgagatccttat |
51301560 |
T |
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| Q |
114 |
ttcattttattgtctaacattttgttagtctttctctctctttgtttagtatggattttagttacaatagagcaaataagtcaacagactttataaatat |
213 |
Q |
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| T |
51301559 |
ttcattttattgtctaacattttgttagtctttct--ctctttgtttagtatggattttagttacaatagagcaaataagtcaacagactttataaatat |
51301462 |
T |
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| Q |
214 |
tggtctcgtcaaaagttcagcac |
236 |
Q |
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| T |
51301461 |
tggtctcgtcaaaagttcagcac |
51301439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 44112692 - 44112473
Alignment:
| Q |
14 |
caatattgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagatttattcatctattgtatgagatccttat |
113 |
Q |
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| T |
44112692 |
caatactgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagattttttcacctattgcatgagattgttat |
44112593 |
T |
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| Q |
114 |
ttcatttta-ttgtctaacattttgttagtctttctctctctttgtttagtatggattttagttacaatagagcaaataagtcaacagactttataaata |
212 |
Q |
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| T |
44112592 |
ttcattatatttgtctaacattttactagtctttctttctctttgtttagtatggattttagttacaatagagcaaataagttgacagactttaaaagta |
44112493 |
T |
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| Q |
213 |
ttggtctcgtcaaaagttca |
232 |
Q |
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| T |
44112492 |
ttggtctcgtcagaagttca |
44112473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 50015635 - 50015416
Alignment:
| Q |
14 |
caatattgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagatttattcatctattgtatgagatccttat |
113 |
Q |
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| T |
50015635 |
caatactgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagattttttcacctattgcatgcgattgttat |
50015536 |
T |
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| Q |
114 |
ttcattttatt-gtctaacattttgttagtctttctctctctttgtttagtatggattttagttacaatagagcaaataagtcaacagactttataaata |
212 |
Q |
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| T |
50015535 |
ttaattatatttgtctaacattttactagtctttttctctctttgtttagtatggattttagttacaatagagcaaataagttgacagactttaaaaata |
50015436 |
T |
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| Q |
213 |
ttggtctcgtcaaaagttca |
232 |
Q |
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| T |
50015435 |
ttggtgtcgtcagaagttca |
50015416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 18854276 - 18854061
Alignment:
| Q |
20 |
tgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagatttattcatctattgtatgagatccttatttcatt |
119 |
Q |
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| T |
18854276 |
tgtcaagatccacactaaaaggtgcccgggaatttttagttccatcaagaatccaggtatttagattttttcacctattgcatgagattgttctttcatt |
18854177 |
T |
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| Q |
120 |
tta-ttgtctaacattttgttagtctttctctctctttgtttagtatggattttagttacaatagagcaaataagtcaacagactttataaatattggtc |
218 |
Q |
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| T |
18854176 |
atagttgtctaccattttataagtcattctttctcttggtttagtacggattgtagttaaaatagagcaaataagtcatcgaactttaaaaatattggtc |
18854077 |
T |
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| Q |
219 |
tcgtcaaaagttcagc |
234 |
Q |
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| T |
18854076 |
tcgtcagaagttcagc |
18854061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18842810 - 18842745
Alignment:
| Q |
20 |
tgtcaagatccacaccagaaggtgcccgggattatttagttccatcaagaatccaggtatttagat |
85 |
Q |
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| T |
18842810 |
tgtcaagatccacaccagaaggtgcccgggaatatttagttccatcaagaatccaggtatttagat |
18842745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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