View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_high_23 (Length: 210)
Name: NF20158_high_23
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 6710076 - 6710253
Alignment:
| Q |
20 |
gcatcaatcttatgtataatttgtctcctcatgaagcaagtgtgtcatcgggatctgaagttggaaaacactttgttggatggagatccagcacttcatt |
119 |
Q |
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| T |
6710076 |
gcatcaatcttatgtataatttgtctcctcatgaagcaagtatgtcatcgggatctgaagttggaaaacactttgttggatggagatccagcacttcatt |
6710175 |
T |
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| Q |
120 |
tgaagatctgtgattttggatactccaaggtaagggcttatttgcttataaagatttctgttgtttgagttctgtgct |
197 |
Q |
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| T |
6710176 |
tgaagatctgtgattttggatactccaaggtaagggcttatttgcttataaagatttctgttgtttgagttctgtgct |
6710253 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 34129002 - 34128876
Alignment:
| Q |
26 |
atcttatgtataatttgtctcctcatgaagcaagtgtgtcatcgggatctgaagttggaaaacactttgttggatggagatccagcacttcatttgaaga |
125 |
Q |
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||||||||| |||| |||||| ||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||| || | | || |||||| |
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| T |
34129002 |
atcttatgtgtaatgtgtctcttcatgaagcaagtatgtcaccgggacctgaaattggaaaatactttgttggatggaagcccgactcctcgactgaaga |
34128903 |
T |
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| Q |
126 |
tctgtgattttggatactccaaggtaa |
152 |
Q |
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| T |
34128902 |
tatgtgattttggttactccaaggtaa |
34128876 |
T |
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