View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_high_4 (Length: 365)
Name: NF20158_high_4
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 319
Target Start/End: Complemental strand, 395487 - 395193
Alignment:
| Q |
22 |
agaggtgccctttcagaagccccagtaaatcctttgtcagtcttctccagctgctcatctgcacctccataagcttcattatcctggtttaatagctttt |
121 |
Q |
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| T |
395487 |
agaggtgccctttcagaagccccggtaaatcctttgtcagtcttctccagctgctcatctgcacctccataagcttcattatcctggtttaatagctttt |
395388 |
T |
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| Q |
122 |
catcatgcatgacctgtgtgccttgtttagtataagacataccaagagcaaccttctcacttatgtcacgatccttatctctagtaatcttgcacttctt |
221 |
Q |
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| T |
395387 |
catcatgcatgacctgtgtgccttgtttagtataagacataccaagagcaaccttctcacttatatcacgatccttatctctagtaatcttgcacttctt |
395288 |
T |
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| Q |
222 |
tcccatgccaacatccttagcatataaccttccctccttttccgaagcaaccggaggagccacattatgactaattctctccgaacgcgctttctgag |
319 |
Q |
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| T |
395287 |
tcccatgccaacatccttagcatataaccttccctccttttccgaagcaaccggaggagccac---atgactaattctctccgaacgcgctttctgag |
395193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 11454780 - 11454940
Alignment:
| Q |
100 |
ttatcctggtttaatagcttttcatcatgcatgacctgtgtgccttgtttagtataagacataccaagagcaaccttctcacttatgtcacgatccttat |
199 |
Q |
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| T |
11454780 |
ttatcctggttgaatagcctctcatcatacatgacctctgtcccttgcttggtggaagccataccaagagcaactttctcacttatatcacgatccctat |
11454879 |
T |
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| Q |
200 |
ctctagtaatcttgcacttctttcccatgccaacatccttagcatataaccttccctcctt |
260 |
Q |
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| T |
11454880 |
ctctagtaatcttgctcttctttcccatggcagcatccttagcttctatccttctctcctt |
11454940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 11454628 - 11454670
Alignment:
| Q |
62 |
tcttctccagctgctcatctgcacctccataagcttcattatc |
104 |
Q |
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| T |
11454628 |
tcttctccagctgctcgtctgcacctccataagcttcattatc |
11454670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 11455157 - 11455212
Alignment:
| Q |
294 |
aattctctccgaacgcgctttctgagccaaagccctcaactcctgctctttccttt |
349 |
Q |
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| T |
11455157 |
aattctctctgagcgtgctttctgagccaaagccctcaactcctgttccttccttt |
11455212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 44946104 - 44946006
Alignment:
| Q |
162 |
accaagagcaaccttctcacttatgtcacgatccttatctctagtaatcttgcacttctttcccatgccaacatccttagcatataaccttccctcctt |
260 |
Q |
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||||||| ||| ||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||| || |||||| ||| | ||| |||| |||||| |
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| T |
44946104 |
accaagatcaagtttctcacttatatcacgatccctatctctagtaatcctgctcttcttccccatggcagcatcctcagcttctaatcttctctcctt |
44946006 |
T |
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