View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_high_6 (Length: 361)
Name: NF20158_high_6
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_high_6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 37834968 - 37835306
Alignment:
| Q |
14 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaact |
113 |
Q |
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| T |
37834968 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttttattcaatgaacaact |
37835067 |
T |
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| Q |
114 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacata |
213 |
Q |
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| T |
37835068 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacac--- |
37835164 |
T |
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| Q |
214 |
taaggtttaagacactgcttgttcaaagtagaacaatatcattcatcagctcccaaagctgt-ccagaaaacgtgacaaaggtaagtatttgttctgttc |
312 |
Q |
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| T |
37835165 |
-------taagacactgcttgttcaaagtagaacaatatcattcatcagctcccaaagctgtcccagaaaacgtgacaaaggtaagtatttgttctgttt |
37835257 |
T |
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| Q |
313 |
caagttgcaacctacaaaccttgtccaaatgactagaactagttgtagc |
361 |
Q |
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| T |
37835258 |
caagttgcaacctacaaaccttgtccaaatgactagaactagttgtagc |
37835306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 40 - 361
Target Start/End: Original strand, 12280991 - 12281312
Alignment:
| Q |
40 |
acaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
139 |
Q |
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| T |
12280991 |
acaacggataacatcctccaccagactacatgatatagcatgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
12281090 |
T |
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| Q |
140 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacatataaggtttaagacactgcttgttcaa |
239 |
Q |
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| T |
12281091 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattaaatgaactagataaaataggaggaacacatataaggtttaagacattgcttgttcaa |
12281190 |
T |
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| Q |
240 |
agtagaacaatatcattcatcagctcccaaagctgtccagaaaacgtgacaaaggtaagtatttgttctgttccaagttgcaacctacaaaccttgtcca |
339 |
Q |
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| T |
12281191 |
agtagaacaatatcattcatcagctcccaaagctgtcctagaaacgtgacaaaggtaagtatttgttctgttccaagttgcagcctacaaaccttgtcca |
12281290 |
T |
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| Q |
340 |
aatgactagaactagttgtagc |
361 |
Q |
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| T |
12281291 |
aatgattagaactagtcgtagc |
12281312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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