View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_10 (Length: 353)
Name: NF20158_low_10
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 48800005 - 48799700
Alignment:
| Q |
1 |
tgaaattcccttgtttggtttgttaaagaatgagggaaagggagagaacattagtgaagtgaagaagtaaacaaaacatgaattgacttatatgtgaaga |
100 |
Q |
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| T |
48800005 |
tgaaattcccttgtttggtttgttaaagaatgagggaaagggagagaacattagtgaagtgaagaagtaaacaaaacatgaattgacttat--gtgaaga |
48799908 |
T |
|
| Q |
101 |
aattccaaaactgatattgggtaacttgaaagtaataaaggattgttggttataatacatgtaacaccaattttgagtttgaacaaaatggaatgaagta |
200 |
Q |
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| T |
48799907 |
aattccaaaactgatattgggtaacttgaaagtaataaaggattgttggttataatacatgtaacaccaattttgagtttgaacaaaatggaatgaagta |
48799808 |
T |
|
| Q |
201 |
ctgtagttaacaaagacaacaaattttaagccattttcactgcctctaaattccctcaactctgaagggaatgagttaccccttcaaacatattgattcg |
300 |
Q |
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| T |
48799807 |
ctgtagttaacaaagacaacaaattttaagccattttcactgcctctaaattcccccaactctgaagggaatgagttaccccttcaaacatattgattcg |
48799708 |
T |
|
| Q |
301 |
attggacc |
308 |
Q |
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|||||||| |
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| T |
48799707 |
attggacc |
48799700 |
T |
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