View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20158_low_12 (Length: 345)

Name: NF20158_low_12
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20158_low_12
NF20158_low_12
[»] chr1 (7 HSPs)
chr1 (19-345)||(32808810-32809151)
chr1 (19-100)||(18640558-18640639)
chr1 (28-173)||(28201628-28201775)
chr1 (26-88)||(18643270-18643332)
chr1 (24-88)||(29530137-29530201)
chr1 (153-195)||(28201587-28201629)
chr1 (26-100)||(29547794-29547868)
[»] chr5 (3 HSPs)
chr5 (28-100)||(24213348-24213420)
chr5 (38-100)||(24228341-24228403)
chr5 (156-196)||(29681586-29681626)
[»] chr2 (3 HSPs)
chr2 (19-88)||(25232029-25232099)
chr2 (31-123)||(45276395-45276487)
chr2 (19-172)||(19912311-19912468)
[»] chr7 (3 HSPs)
chr7 (28-75)||(25617059-25617106)
chr7 (123-184)||(17188518-17188578)
chr7 (19-103)||(42129539-42129624)
[»] chr4 (4 HSPs)
chr4 (29-115)||(7895139-7895225)
chr4 (34-88)||(26654488-26654542)
chr4 (123-172)||(2928820-2928869)
chr4 (19-99)||(18902124-18902205)
[»] chr3 (5 HSPs)
chr3 (19-61)||(7642337-7642379)
chr3 (26-100)||(21587192-21587266)
chr3 (31-88)||(13639648-13639705)
chr3 (19-88)||(20458832-20458901)
chr3 (30-100)||(20463185-20463255)
[»] chr6 (1 HSPs)
chr6 (26-100)||(19441198-19441272)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 32808810 - 32809151
Alignment:
Q  19 cctataaccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaacacatattttaacgt 118  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||    
T  32808810 cctataaccccattagtgaatatatggttagtggtccttaattgatttgaatattcacttgctcaattattttctataaataaaactcatattttagcgt 32808909  T
Q  119 aatgacac--ttgaaatgagaataagacaaaaactctcatcttctatatttttgatcttgtcatttagcttatttcataaaaataattcatatacatcaa 216  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32808910 aatgacacacttgaaatgagaataagacaaaaactctcatcttctatatttttgatcttgtcatttagcttatttcataaaaataattcatatacatcaa 32809009  T
Q  217 tattacttagaattaagaagcatacttcctcacagtcttcttcccaataccctat-----------ctagacaaattcacatatcaacatttgattttta 305  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||           | ||||||||||||||||||||||||||||||||    
T  32809010 tattactaagaattaagaagcatgcttcctcacagtcttcttcccaataccctatccttgaaaataccagacaaattcacatatcaacatttgattttta 32809109  T
Q  306 gatatatgatctcaac--ctctaaattattggcaaatcaaac 345  Q
    ||||||||||||||||  ||||||||| ||||||||||||||    
T  32809110 gatatatgatctcaacctctctaaattgttggcaaatcaaac 32809151  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 18640639 - 18640558
Alignment:
Q  19 cctataaccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||||||||||| |||| | |||||||||    
T  18640639 cctataacctcattagtgaatgtatggttagtggtccttaattgctttgatcattcacttgctcatttgtgtcctataaata 18640558  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 28201775 - 28201628
Alignment:
Q  28 ccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaacacatattttaacgtaat--gaca 125  Q
    ||||||||||||||||||||||| ||||||||||| |||||  ||||||||| ||| || | | |||||||||  || |||||||||| |||||   |||    
T  28201775 ccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcatttatgtcctataaatatgactcatattttaatgtaatagcaca 28201676  T
Q  126 cttgaaatgagaataagacaaaaactctcatcttctatatttttgatc 173  Q
    |||| || |||||||  |||||||| ||||| |||| ||| |||||||    
T  28201675 cttgtaaagagaatagtacaaaaacactcatattctctatctttgatc 28201628  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 18643332 - 18643270
Alignment:
Q  26 ccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    |||||||||||| |||||||||||||||| ||||||| |||||  ||||| ||||||| ||||    
T  18643332 ccccattagtgactgtatggttagtggtccttaattgctttgatcattcatttgctcatttgt 18643270  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 29530137 - 29530201
Alignment:
Q  24 aaccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    |||||||| ||| |||| ||||||||||||| ||||||| |||||  ||||||||||||| ||||    
T  29530137 aaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcatttgt 29530201  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 28201629 - 28201587
Alignment:
Q  153 tcatcttctatatttttgatcttgtcatttagcttatttcata 195  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||    
T  28201629 tcatcttctctattttttatcttgtcatttagtttatttcata 28201587  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 29547794 - 29547868
Alignment:
Q  26 ccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    |||||||||| |||| ||||||||||||| ||||||  |||||  ||||||||||||| || | | |||||||||    
T  29547794 ccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcatttatgtcctataaata 29547868  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 24213420 - 24213348
Alignment:
Q  28 ccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    |||||||| |||||||||||| ||||||||||||| |||||  ||||||||||||| |||| | |||||||||    
T  24213420 ccattagtaaatgtatggttattggtctttaattggtttgatcattcacttgctcatttgtgtcctataaata 24213348  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 24228403 - 24228341
Alignment:
Q  38 atgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    ||||||||||| ||||||||||||| |||||  |||||||||||||||||| | |||||||||    
T  24228403 atgtatggttattggtctttaattggtttgatcattcacttgctcaattgtatcctataaata 24228341  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 29681626 - 29681586
Alignment:
Q  156 tcttctatatttttgatcttgtcatttagcttatttcataa 196  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  29681626 tcttctctatttttcatcttgtcatttagtttatttcataa 29681586  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 25232029 - 25232099
Alignment:
Q  19 cctataac-cccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||| |||||  ||||||||||||| ||||    
T  25232029 cctataactcccattagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcatttgt 25232099  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 45276395 - 45276487
Alignment:
Q  31 ttagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaacacatattttaacgtaatga 123  Q
    |||||||||||||||||||||||| ||||| | |||||  |||||||| |||| |||| | |||||||||  || |||||||||  |||||||    
T  45276395 ttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcatttgtgtcctataaataggactcatattttagtgtaatga 45276487  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 19912311 - 19912468
Alignment:
Q  19 cctataacccc-attagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaacacatattttaacg 117  Q
    ||||||||||| |||| |||||||||||||||| ||| ||||||| |||||  | ||||||||||| |||| | |||||||||  ||  ||||| ||| |    
T  19912311 cctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcatttgtgtcctataaataggacctatattataatg 19912410  T
Q  118 taa---tgacacttgaaatgagaataagacaaaaactctcatcttctatatttttgat 172  Q
    |||     |||||||  | |||||||| |||||| |||||||||||| ||| ||||||    
T  19912411 taaaatatacacttgtgaagagaataatacaaaagctctcatcttctctatctttgat 19912468  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 25617106 - 25617059
Alignment:
Q  28 ccattagtgaatgtatggttagtggtctttaattgatttgaatattca 75  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25617106 ccattagtgaatgtatggttagtggtctttaattgttttaattattca 25617059  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 17188518 - 17188578
Alignment:
Q  123 acacttgaaatgagaataagacaaaaactctcatcttctatatttttgatcttgtcatttag 184  Q
    |||||| ||| |||||||| |||||  |||||||||||| |||||||||| |||||||||||    
T  17188518 acacttaaaaagagaataatacaaag-ctctcatcttctctatttttgatattgtcatttag 17188578  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 42129539 - 42129624
Alignment:
Q  19 cctataacccc-attagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaa 103  Q
    ||||||||||| |||||||||| |||||||| || || ||||||  |||||  ||||||||||||| |||| | ||||||| ||||    
T  42129539 cctataacccctattagtgaatatatggttaatgatccttaatttctttgatcattcacttgctcatttgtgtgctataaacaaaa 42129624  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 7895139 - 7895225
Alignment:
Q  29 cattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaataaaacacatattttaa 115  Q
    ||||||||||| |||||||||||||| ||||||  |||||| ||| | ||||| | |||| |||||||||||| || ||| ||||||    
T  7895139 cattagtgaatatatggttagtggtccttaattattttgaacatttatttgcttatttgtgttctataaataagactcatgttttaa 7895225  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 26654488 - 26654542
Alignment:
Q  34 gtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||| |||| ||||    
T  26654488 gtgaatgtatggttagtggtccttaattgctttgattattcacttactcatttgt 26654542  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 2928869 - 2928820
Alignment:
Q  123 acacttgaaatgagaataagacaaaaactctcatcttctatatttttgat 172  Q
    ||||||| ||||||||||| | ||||||||||||||||| ||| ||||||    
T  2928869 acacttgtaatgagaataatataaaaactctcatcttctctatctttgat 2928820  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 18902205 - 18902124
Alignment:
Q  19 cctataacc-ccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaat 99  Q
    ||||||||| ||||||||||||| ||| ||| ||||| ||||||| |||||   |||||||||||| |||| | ||||||||    
T  18902205 cctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcatttgtgtcctataaat 18902124  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 7642337 - 7642379
Alignment:
Q  19 cctataaccccattagtgaatgtatggttagtggtctttaatt 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  7642337 cctataaccccattagtgaatttatggttagtggtccttaatt 7642379  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 21587266 - 21587192
Alignment:
Q  26 ccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    ||||||||||||| |||||||||||| || |||| || |||||  ||||||||||||| |||| | |||||||||    
T  21587266 ccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcatttgtgtcctataaata 21587192  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 13639648 - 13639705
Alignment:
Q  31 ttagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    ||||| |||||||||||||||||| ||||||| |||||  ||||||||||||| ||||    
T  13639648 ttagtaaatgtatggttagtggtccttaattggtttgatcattcacttgctcatttgt 13639705  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20458901 - 20458832
Alignment:
Q  19 cctataaccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgt 88  Q
    ||||||||||||||||||||||| |||||||||  | |||| || |||||  ||||||||||||| ||||    
T  20458901 cctataaccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcatttgt 20458832  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 20463255 - 20463185
Alignment:
Q  30 attagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    ||||||||||||||||||||||| | |||| || | |||  ||||||||||||| ||||  ||||||||||    
T  20463255 attagtgaatgtatggttagtggaccttaaatgctgtgatcattcacttgctcatttgtgatctataaata 20463185  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 19441272 - 19441198
Alignment:
Q  26 ccccattagtgaatgtatggttagtggtctttaattgatttgaatattcacttgctcaattgttttctataaata 100  Q
    ||||||| || ||| |||||||||||||| |||| || |||||  ||||||||||||| |||| | |||||||||    
T  19441272 ccccattggtaaatctatggttagtggtccttaaatggtttgatcattcacttgctcatttgtgtcctataaata 19441198  T

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