View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_14 (Length: 336)
Name: NF20158_low_14
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 141 - 320
Target Start/End: Complemental strand, 8371860 - 8371681
Alignment:
| Q |
141 |
aatgatgtttgtgtttaaaaataaattaacgtattaaaatggttctggaaaaagaaaagggtgggaatctgtgtttatttgtgtgggagagaatagaaga |
240 |
Q |
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| T |
8371860 |
aatgatgtttgtgtttaaaaataaattaacgtattaaaatggttctggaaaaagaaaggggtgggaatctgtgtttatttgtgtggaaaagaatagaaga |
8371761 |
T |
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| Q |
241 |
gaatgagactggctgatgaatgctgatgatgatggaaacaagaaaggggtgaagaaataaaattgatggaatggggataa |
320 |
Q |
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| T |
8371760 |
gaatgagaccggctgatgaatgatgatgatgatggaaacaagaaaggggtgaagaaataaaattgatggaatggggataa |
8371681 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 45047973 - 45047927
Alignment:
| Q |
266 |
atgatgatggaaacaagaaaggggtgaagaaataaaattgatggaat |
312 |
Q |
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| T |
45047973 |
atgatgatgaaaacaagaaagtggtgaaggaataaaattgatggaat |
45047927 |
T |
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