View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_16 (Length: 285)
Name: NF20158_low_16
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7996371 - 7996630
Alignment:
| Q |
5 |
gagagagaagaaagcaacatcaaagcctgaatttgcaagatatgttgagtatttgaaggaaggaggcatgtgggattccaattcaaataaacctgtgatt |
104 |
Q |
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| T |
7996371 |
gagaaagaagaaagcaacatcaaagcctgaatttgcaagatatgttgagtatttgaaggaaggaggcatgtgggattctaattcaaataaacctgtgatt |
7996470 |
T |
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| Q |
105 |
tattataaatgatgtgttttgctcaaattttgaattcaattgatgttagctagtgctatttcttgtaaaaactagagtttgaatttcatatcaaatttgc |
204 |
Q |
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| T |
7996471 |
tattataaatgatgtgttttgctcaaattttgaattcaattgatgt----tagtgctatttcttgtaaaaaatagagtttgaatttcatatcaaatttgc |
7996566 |
T |
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| Q |
205 |
ataagaggatgtggatcaaaatatatatgattttcttcatcattgatatgatgtatacatgcat |
268 |
Q |
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| T |
7996567 |
ataagaggatgtggatcaaaatataaatgattttcttcatcattgatatgatgtatacatgcat |
7996630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 270
Target Start/End: Original strand, 8957460 - 8957675
Alignment:
| Q |
41 |
aagatatgttgagtatttgaaggaaggaggcatgtgggattccaattcaaataaacctgtgatttattataaatgatgtgttttgctcaaattttgaatt |
140 |
Q |
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| T |
8957460 |
aagatatgttgagtatttgaaggaaggaggcatgt----------ttcaaataaacctgtgatttattataaatgatgtgttttgctcaaattttgaatt |
8957549 |
T |
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| Q |
141 |
caattgatgttagctagtgctatttcttgtaaaaactagagtttgaatttcatatcaaatttgcataagaggatgtggatcaaaatatatatgattttct |
240 |
Q |
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| T |
8957550 |
caatttatgttag----tgctatttcttgtaaaaactagagtttgaatttcatatcaaatttgcataagaggatgtggatcaaaatatatatgattttct |
8957645 |
T |
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| Q |
241 |
tcatcattgatatgatgtatacatgcatgt |
270 |
Q |
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| T |
8957646 |
tcatcattgatatgatgtatacatgcatgt |
8957675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 32781005 - 32780938
Alignment:
| Q |
30 |
cctgaatttgcaagatatgttgagtatttgaaggaaggaggcatgtgggattccaattcaaataaacc |
97 |
Q |
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| T |
32781005 |
cctgaatttgcaaggtatattgagtatcttaaggaaggaggcatgtgggatttgaattccaataaacc |
32780938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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