View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20158_low_17 (Length: 264)

Name: NF20158_low_17
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20158_low_17
NF20158_low_17
[»] chr7 (31 HSPs)
chr7 (38-246)||(46918339-46918546)
chr7 (22-246)||(40775189-40775413)
chr7 (49-246)||(47749681-47749880)
chr7 (49-186)||(24470342-24470481)
chr7 (49-186)||(24475290-24475429)
chr7 (24-246)||(25855188-25855416)
chr7 (49-186)||(28015303-28015444)
chr7 (35-186)||(49166860-49167013)
chr7 (21-185)||(35141779-35141946)
chr7 (96-246)||(7985887-7986038)
chr7 (34-186)||(10250508-10250662)
chr7 (57-172)||(8611663-8611780)
chr7 (35-246)||(23732361-23732574)
chr7 (96-186)||(47156391-47156481)
chr7 (96-180)||(30992856-30992942)
chr7 (35-186)||(35135210-35135364)
chr7 (51-246)||(23177551-23177747)
chr7 (51-186)||(38649384-38649523)
chr7 (96-186)||(44681457-44681548)
chr7 (62-179)||(21329330-21329448)
chr7 (95-246)||(26017626-26017778)
chr7 (36-186)||(33530495-33530646)
chr7 (71-184)||(8319284-8319400)
chr7 (37-184)||(37399551-37399711)
chr7 (77-179)||(29804710-29804814)
chr7 (112-246)||(42490713-42490849)
chr7 (140-186)||(43483640-43483687)
chr7 (141-186)||(9933888-9933934)
chr7 (140-185)||(39090156-39090202)
chr7 (76-186)||(41748526-41748640)
chr7 (96-155)||(43807209-43807269)
[»] chr8 (31 HSPs)
chr8 (22-246)||(31874003-31874230)
chr8 (32-246)||(9269951-9270167)
chr8 (62-246)||(36545749-36545934)
chr8 (35-185)||(9992598-9992751)
chr8 (96-246)||(8054775-8054927)
chr8 (71-246)||(44295286-44295462)
chr8 (36-186)||(32256748-32256901)
chr8 (70-143)||(10042730-10042803)
chr8 (49-186)||(16937366-16937506)
chr8 (53-186)||(37658917-37659053)
chr8 (62-186)||(13864320-13864446)
chr8 (44-186)||(15665481-15665626)
chr8 (71-186)||(31147828-31147944)
chr8 (62-185)||(37719812-37719938)
chr8 (36-186)||(23766676-23766827)
chr8 (35-112)||(37129761-37129838)
chr8 (96-186)||(5989625-5989717)
chr8 (63-119)||(14327441-14327497)
chr8 (58-184)||(26937482-26937610)
chr8 (114-246)||(16996857-16996987)
chr8 (133-181)||(2628946-2628995)
chr8 (62-119)||(32061755-32061812)
chr8 (140-246)||(41996585-41996691)
chr8 (71-186)||(3680891-3681010)
chr8 (195-246)||(32920747-32920798)
chr8 (66-186)||(284502-284624)
chr8 (66-186)||(631253-631375)
chr8 (66-186)||(817065-817187)
chr8 (112-186)||(5917769-5917843)
chr8 (107-184)||(32412797-32412875)
chr8 (22-125)||(14115883-14115984)
[»] chr3 (32 HSPs)
chr3 (22-186)||(35501786-35501952)
chr3 (35-246)||(20201026-20201239)
chr3 (35-246)||(20203208-20203421)
chr3 (36-246)||(1165364-1165576)
chr3 (22-246)||(21803452-21803676)
chr3 (35-186)||(50519723-50519876)
chr3 (50-246)||(22843999-22844198)
chr3 (51-246)||(43029632-43029829)
chr3 (28-184)||(20251577-20251737)
chr3 (62-172)||(41882449-41882561)
chr3 (96-246)||(33977893-33978039)
chr3 (24-185)||(25374098-25374261)
chr3 (36-186)||(42106046-42106199)
chr3 (22-239)||(43839493-43839708)
chr3 (62-186)||(22286777-22286902)
chr3 (22-186)||(40462022-40462191)
chr3 (63-143)||(37051586-37051666)
chr3 (22-245)||(29776659-29776868)
chr3 (71-186)||(33076276-33076399)
chr3 (77-184)||(36540701-36540809)
chr3 (83-186)||(40797015-40797120)
chr3 (26-245)||(47914563-47914773)
chr3 (140-246)||(32237964-32238069)
chr3 (49-186)||(913343-913485)
chr3 (21-106)||(27056000-27056086)
chr3 (77-185)||(53426780-53426884)
chr3 (63-173)||(1220255-1220367)
chr3 (71-143)||(43242781-43242853)
chr3 (140-186)||(28995333-28995380)
chr3 (109-185)||(14741353-14741431)
chr3 (71-143)||(1806532-1806604)
chr3 (96-155)||(45664224-45664284)
[»] chr4 (33 HSPs)
chr4 (36-246)||(9661787-9661999)
chr4 (49-246)||(4634230-4634429)
chr4 (49-185)||(16991819-16991958)
chr4 (36-185)||(28588495-28588648)
chr4 (39-181)||(43156713-43156858)
chr4 (96-246)||(23067816-23067967)
chr4 (35-173)||(1645981-1646122)
chr4 (62-186)||(54420740-54420865)
chr4 (71-246)||(14542480-14542656)
chr4 (71-246)||(34115619-34115796)
chr4 (98-246)||(41486572-41486721)
chr4 (22-184)||(37869446-37869608)
chr4 (35-173)||(3168973-3169114)
chr4 (133-246)||(31601326-31601441)
chr4 (49-245)||(46728889-46729086)
chr4 (62-186)||(51646054-51646180)
chr4 (71-179)||(6408409-6408520)
chr4 (134-242)||(38170131-38170239)
chr4 (36-131)||(1657654-1657750)
chr4 (36-143)||(29577157-29577265)
chr4 (76-184)||(30416650-30416761)
chr4 (62-186)||(35338356-35338481)
chr4 (96-180)||(52555754-52555840)
chr4 (62-143)||(3673584-3673665)
chr4 (41-246)||(4622677-4622885)
chr4 (147-246)||(46716862-46716960)
chr4 (140-229)||(20961491-20961578)
chr4 (107-186)||(26576531-26576611)
chr4 (195-246)||(33020893-33020944)
chr4 (140-186)||(40859686-40859733)
chr4 (36-101)||(9474623-9474689)
chr4 (96-167)||(4959622-4959694)
chr4 (96-178)||(42972033-42972117)
[»] scaffold0045 (1 HSPs)
scaffold0045 (49-186)||(9675-9815)
[»] chr2 (35 HSPs)
chr2 (36-246)||(25771379-25771591)
chr2 (49-246)||(3390379-3390578)
chr2 (36-246)||(40125323-40125535)
chr2 (57-186)||(27191363-27191493)
chr2 (57-186)||(27841177-27841307)
chr2 (36-184)||(42105781-42105932)
chr2 (21-246)||(5930342-5930569)
chr2 (62-186)||(6089854-6089980)
chr2 (51-246)||(27024107-27024304)
chr2 (35-246)||(25516427-25516638)
chr2 (22-246)||(3602907-3603131)
chr2 (96-246)||(7640324-7640475)
chr2 (36-186)||(37883587-37883740)
chr2 (53-246)||(41841900-41842094)
chr2 (52-186)||(10588988-10589126)
chr2 (35-186)||(41176795-41176952)
chr2 (62-246)||(44167679-44167862)
chr2 (63-171)||(3464921-3465031)
chr2 (49-185)||(19581030-19581170)
chr2 (71-185)||(26491273-26491388)
chr2 (35-246)||(43566810-43567019)
chr2 (24-186)||(34479878-34480043)
chr2 (36-246)||(25623013-25623225)
chr2 (96-246)||(9715512-9715664)
chr2 (75-186)||(29812642-29812755)
chr2 (87-246)||(16879933-16880087)
chr2 (195-246)||(5071338-5071389)
chr2 (106-186)||(29734194-29734277)
chr2 (87-186)||(13268560-13268660)
chr2 (197-246)||(16992066-16992115)
chr2 (62-165)||(36507892-36507997)
chr2 (62-111)||(44951463-44951512)
chr2 (87-143)||(15674046-15674102)
chr2 (22-109)||(24500442-24500530)
chr2 (194-242)||(43929328-43929376)
[»] chr6 (21 HSPs)
chr6 (22-246)||(20844929-20845154)
chr6 (22-186)||(16913249-16913415)
chr6 (22-242)||(548838-549057)
chr6 (74-186)||(12576505-12576619)
chr6 (35-184)||(7049180-7049331)
chr6 (96-246)||(19759783-19759934)
chr6 (62-186)||(4663847-4663973)
chr6 (96-246)||(13234076-13234226)
chr6 (54-246)||(32457598-32457792)
chr6 (21-173)||(15128189-15128344)
chr6 (96-184)||(33194600-33194690)
chr6 (71-186)||(891558-891675)
chr6 (194-246)||(5417166-5417218)
chr6 (71-246)||(31747930-31748103)
chr6 (96-180)||(32804289-32804376)
chr6 (35-152)||(32574386-32574505)
chr6 (128-246)||(23843392-23843511)
chr6 (75-184)||(10744553-10744665)
chr6 (96-186)||(8644240-8644332)
chr6 (194-246)||(15128121-15128173)
chr6 (20-119)||(32257902-32258001)
[»] chr1 (29 HSPs)
chr1 (53-186)||(33703536-33703671)
chr1 (36-246)||(22344880-22345092)
chr1 (22-172)||(44514030-44514184)
chr1 (96-246)||(44562717-44562868)
chr1 (96-246)||(630752-630904)
chr1 (96-246)||(5832228-5832380)
chr1 (22-184)||(14717272-14717434)
chr1 (35-184)||(30853811-30853964)
chr1 (63-246)||(38646546-38646730)
chr1 (36-186)||(37685122-37685275)
chr1 (36-186)||(37700243-37700396)
chr1 (62-182)||(6212917-6213039)
chr1 (76-180)||(22032123-22032229)
chr1 (102-186)||(8893294-8893380)
chr1 (96-180)||(21326468-21326554)
chr1 (109-246)||(23320448-23320586)
chr1 (71-184)||(26199567-26199677)
chr1 (38-181)||(46589109-46589256)
chr1 (22-88)||(15276558-15276625)
chr1 (100-185)||(45659041-45659128)
chr1 (77-173)||(17579744-17579842)
chr1 (71-186)||(35077917-35078033)
chr1 (194-246)||(38644765-38644817)
chr1 (87-143)||(52839409-52839465)
chr1 (140-186)||(1768006-1768053)
chr1 (113-222)||(900134-900244)
chr1 (106-186)||(49651840-49651922)
chr1 (197-246)||(23257185-23257234)
chr1 (99-143)||(13691830-13691874)
[»] chr5 (26 HSPs)
chr5 (34-246)||(33486537-33486752)
chr5 (49-246)||(6887146-6887345)
chr5 (36-246)||(31645763-31645975)
chr5 (52-186)||(41554436-41554574)
chr5 (36-184)||(18472753-18472902)
chr5 (71-246)||(19646009-19646185)
chr5 (34-186)||(41063423-41063576)
chr5 (62-172)||(28618565-28618677)
chr5 (35-173)||(2415333-2415474)
chr5 (96-246)||(29310322-29310468)
chr5 (62-143)||(34893988-34894069)
chr5 (76-186)||(4070530-4070641)
chr5 (98-180)||(4726961-4727045)
chr5 (74-182)||(37424966-37425079)
chr5 (96-185)||(41358033-41358125)
chr5 (62-174)||(6647952-6648066)
chr5 (158-246)||(10924101-10924188)
chr5 (74-186)||(15710513-15710629)
chr5 (86-173)||(41988169-41988258)
chr5 (76-186)||(8812178-8812291)
chr5 (140-184)||(14910693-14910738)
chr5 (153-186)||(28423830-28423863)
chr5 (194-246)||(5378396-5378448)
chr5 (198-246)||(6074704-6074752)
chr5 (194-246)||(9034910-9034962)
chr5 (49-114)||(34843860-34843927)
[»] scaffold0722 (1 HSPs)
scaffold0722 (98-246)||(5494-5643)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-246)||(244566-244782)
[»] scaffold0340 (1 HSPs)
scaffold0340 (82-186)||(11804-11910)
[»] scaffold0316 (1 HSPs)
scaffold0316 (100-246)||(12171-12318)
[»] scaffold1294 (1 HSPs)
scaffold1294 (49-186)||(727-867)
[»] scaffold0011 (1 HSPs)
scaffold0011 (49-183)||(10966-11103)
[»] scaffold0018 (1 HSPs)
scaffold0018 (39-186)||(137085-137235)
[»] scaffold0665 (1 HSPs)
scaffold0665 (22-125)||(1182-1283)
[»] scaffold0024 (1 HSPs)
scaffold0024 (194-246)||(36623-36675)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 46918339 - 46918546
Alignment:
Q  38 ctctcttgtatgccgtcaccaaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaact 137  Q
    ||||||||| |||||||||||||||||| ||||||||  |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46918339 ctctcttgtgtgccgtcaccaaaacctagtttattcttgttcattcatcaaagaggtatgatttagagtcaatttttgacccataatcgcccctttaact 46918438  T
Q  138 cgttttctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtc 237  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| |       ||||||||||||| ||||||||||||||||||||||||||||||    
T  46918439 cgttttctctttccctttattgaaataaatgattttcacatctattttg-ttttttattttgtgatttcgtcatctttgtgcaacattggtttgtttgtc 46918537  T
Q  238 gtctttgtg 246  Q
    |||||||||    
T  46918538 gtctttgtg 46918546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 40775189 - 40775413
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  | ||||||||||||| |||||| ||||||||||| || ||||||||  ||||||||||||||||||||| |||    
T  40775189 tctcttttcccttt--ctctcttgtgagtcgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatcca 40775286  T
Q  121 taatcgcccctttaactcgtttt--ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtg 218  Q
     |||| ||||| |||||||||||  || || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||    
T  40775287 aaatcacccctataactcgtttttccttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtg 40775385  T
Q  219 caacattggtttgtttgtcgtctttgtg 246  Q
    | || |||||||||| ||||||||||||    
T  40775386 cgacgttggtttgttcgtcgtctttgtg 40775413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 47749681 - 47749880
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    |||||||| |||||| |||||| ||||||||||| |||||||||||  ||||||| ||||||||||||||||| |||| ||||| || |||| ||||||     
T  47749681 gccgtcacgaaaaccctaatttcttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctatctcgtttttctc 47749780  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
    |||||| ||||||||||||| ||||||| ||||||||||||       ||||||||||||| |  |||| |||| || |||||||||| |||||||||||    
T  47749781 tttcccttttattgaaataagtgattttcacatctatttcg-ttttttattttgtgatttcgttgtcttcgtgcgacgttggtttgttcgtcgtctttgt 47749879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 24470342 - 24470481
Alignment:
Q  49 gccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    |||||||| |||| |||| ||| ||||||||||| |||||||||||  |||||||||| |||||||||||||| |||| ||||| ||||||| |||||||    
T  24470342 gccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttcta 24470441  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||||||| ||| ||| ||||||||||||    
T  24470442 tttcccttttattgaaataagtga-tttcacatctatttcg 24470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 24475290 - 24475429
Alignment:
Q  49 gccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    |||||||| |||| |||| ||| ||||||||||| |||||||||||  |||||||||| |||||||||||||| |||| ||||| ||||||| |||||||    
T  24475290 gccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttcta 24475389  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||||||| ||| ||| ||||||||||||    
T  24475390 tttcccttttattgaaataagtga-tttcacatctatttcg 24475429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 25855416 - 25855188
Alignment:
Q  24 tcttttccctttttctctcttgtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatg----atttagggtcaatttttgacc 118  Q
    |||||||||||| |||||||||   || |||||| |||||| | ||| ||||||||||| |||||||||||  ||    ||||||||||||||||||| |    
T  25855416 tcttttccctttctctctcttgcgagctgtcaccgaaaccttagttttttctccttcatccaccaaagaggggtgggtgatttagggtcaatttttgatc 25855317  T
Q  119 cataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttg 216  Q
    || ||||  |||| ||||||| |||||| |||||| ||||||||||||| ||||||| | ||||||||||       ||||||||||||  || |||| |    
T  25855316 caaaatcatccctctaactcgtttttctctttcccttttattgaaataagtgattttcatatctatttcg-ttttttattttgtgattttgtcgtcttcg 25855218  T
Q  217 tgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||| || |||||||||| ||||||||||||    
T  25855217 tgcgacgttggtttgttcgtcgtctttgtg 25855188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 28015303 - 28015444
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttct 145  Q
    |||| |||||||||| |||||| ||| ||||||| ||| |||||||  ||||||||||||||||||||| ||| |||| ||||| ||||| |  ||||||    
T  28015303 gccgccaccaaaaccctaattttttcaccttcatccactaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgttttttct 28015402  T
Q  146 atttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    ||||||| ||||||||||||| ||||||  ||||||||||||    
T  28015403 atttcccttttattgaaataagtgatttacacatctatttcg 28015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 49166860 - 49167013
Alignment:
Q  35 tttctctcttgtatgccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||| |||  |||||||| |||| |||| ||| ||||||||||| ||||||||| |  ||||||||||||||||||||||| | |||| ||||| |    
T  49166860 tttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctct 49166959  T
Q  134 aactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||| | ||||||||||||| ||||||||||||| ||| ||| ||||||||||||    
T  49166960 aacttgtttttctatttcccttttattgaaataagtga-tttcacatctatttcg 49167013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 35141946 - 35141779
Alignment:
Q  21 ctctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc 119  Q
    |||| ||||||||||||||||  |||  ||||||||||||| | || ||||||||||||||||||||||||| |  |||||||||||||||||||||||     
T  35141946 ctcttttttccctttttctct--tgtgagccgtcaccaaaatcatagtttattctccttcattcaccaaagaagggtgatttagggtcaatttttgacca 35141849  T
Q  120 ataatcgcccctttaactcgttt---tctatt-tccctttattgaaataaatgatttttacatctatttc 185  Q
    | |||| ||| | |||||| |||   ||| ||  || ||||||||||||| ||||||| |||||||||||    
T  35141848 aaaatcacccttctaactcatttttgtcttttaaccttttattgaaataagtgattttcacatctatttc 35141779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 7985887 - 7986038
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttccctt-tattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    |||||||||||||| |||||||| | || |  |||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||||||            
T  7985887 tgatttagggtcaacttttgacctaaaaccatccctctaactcgtttttctctttcccttctattgaaataaatgattttcacatctatttc-attttgt 7985985  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| ||||||| |||  || |||||||||| ||||||||||||    
T  7985986 attttgtgatttcgtcatcttcgtgtgacgttggtttgttcgtcgtctttgtg 7986038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 10250662 - 10250508
Alignment:
Q  34 ttttctctcttgtatgccgtcaccaaaacct-aatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctt 132  Q
    |||||||||||||  |||||||||||||||| |||||||||| |||||| ||| ||| |||  ||||  |||||||||||| || ||| |||| |||||     
T  10250662 ttttctctcttgttagccgtcaccaaaaccttaatttattcttcttcatccactaaaaaggg-tgataaagggtcaattttcgatccaaaatcacccctc 10250564  T
Q  133 taactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||| ||||||| ||| |||| ||| |||||||||| ||||||| ||||||||||||    
T  10250563 taattcgtttttctaattcctttttattgaaataagtgattttcacatctatttcg 10250508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 8611780 - 8611663
Alignment:
Q  57 caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tt 154  Q
    |||| |||| ||| ||||||||||| ||| |||||||  ||||||||||||  |||||||||||  ||| ||||| ||||||| ||||||||||||| ||    
T  8611780 caaaccctagtttcttctccttcatccacgaaagaggggtgatttagggtctctttttgacccaatatcacccctctaactcgtttttctatttcccttt 8611681  T
Q  155 tattgaaataaatgattt 172  Q
    ||||||||||| ||||||    
T  8611680 tattgaaataagtgattt 8611663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 23732574 - 23732361
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  ||||||||||||||| | |||| |||  ||||||||| ||||||||  ||||||| |||||||||||||| || |||| |  || |    
T  23732574 tttctctcttgtgagccgtcaccaaaaccctcatttcttcaacttcattcatcaaagaggggtgatttaaggtcaatttttgactcaaaatcacttctct 23732475  T
Q  134 aactcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttg 231  Q
    |||||| |||||| ||||   ||||||||||||  ||||||| |||||||||| |       ||||||||||||| || |||| |||| || ||||||||    
T  23732474 aactcgtttttctctttctattttattgaaatatgtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttg 23732376  T
Q  232 tttgtcgtctttgtg 246  Q
    || ||| ||||||||    
T  23732375 ttcgtcatctttgtg 23732361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 47156391 - 47156481
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||||| ||||||||||||| ||| ||||  |||| |||||||||| |||||| ||||| |||||||||| ||||||| ||||||||||||    
T  47156391 tgatttaaggtcaatttttgatccaaaatcatccctctaactcgttt-ctattttccttttattgaaataagtgattttcacatctatttcg 47156481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 30992942 - 30992856
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatct 180  Q
    ||||||| ||| ||||||||||||| |||| ||||| ||||| | ||||||||||||| ||||||||||||| ||||||| ||||||    
T  30992942 tgatttaaggttaatttttgacccaaaatcacccctctaacttgtttttctatttcccttttattgaaataagtgattttcacatct 30992856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 35135364 - 35135210
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||| |  |||||||||||| ||  |||||||||||||| || | ||||||  |||||||| |||||||||||||| | |||||| | | |    
T  35135364 tttctctcttgtaagttgtcaccaaaaccctagattattctccttcatccatctaagaggagtgatttagagtcaatttttgacctaaaatcgctcttct 35135265  T
Q  134 aactcg-ttttctatttcc-ctttattgaaataaatgatttttacatctatttcg 186  Q
    | |||| |||| | |||||  ||||||||||||  ||||||| ||||||||||||    
T  35135264 agctcgtttttatctttcctttttattgaaatacgtgattttcacatctatttcg 35135210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 23177747 - 23177551
Alignment:
Q  51 cgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttg-acccataatcgcccctttaactcgtttt-ctat 147  Q
    |||||| ||||| ||| ||| ||||||||||| ||  ||||| |  ||||||| |||||||||||  ||||| |||| | ||| ||||| ||||| || |    
T  23177747 cgtcacaaaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaatttttttacccaaaatcactcctctaactagtttttctct 23177648  T
Q  148 ttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    || ||||||||||||||| ||||||| ||||||||||||       |||||||||||||  | |||| |||| || ||||||| || ||||||||||||    
T  23177647 tttcctttattgaaataagtgattttcacatctatttcg--ttttcattttgtgatttctccgtcttagtgcgaccttggttttttcgtcgtctttgtg 23177551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 38649523 - 38649384
Alignment:
Q  51 cgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaact--cgttttcta- 146  Q
    ||||||||||| |||||||| ||| |||||||  || ||| |||  |||||||| |||||||||||||||| |||| ||||| ||| |    |||||||     
T  38649523 cgtcaccaaaatcctaatttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcacccctctaatttattttttctat 38649424  T
Q  147 tttccctttattgaaataaatgatttttacatctatttcg 186  Q
    ||||| ||||||||||||| ||||||  ||||||||||||    
T  38649423 tttccttttattgaaataagtgatttacacatctatttcg 38649384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 44681457 - 44681548
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||||||| ||||||||||||| | |||| ||| | ||||||||||| || ||||||||| |||||||||| ||||||| ||||||||||||    
T  44681457 tgatttaggttcaatttttgacctaaaatcaccc-tctaactcgtttttctttttcccttttattgaaataagtgattttcacatctatttcg 44681548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 21329448 - 21329330
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttccctt-tattg 159  Q
    |||||||| ||||| || || |||||||||||  || |||||||||||||||||||||| |||| ||||| ||| ||||||| ||  ||||||| ||||     
T  21329448 cctaatttcttctcatttatccaccaaagaggggtggtttagggtcaatttttgaccca-aatcacccctctaaatcgttttcctcattcccttctattt 21329350  T
Q  160 aaataaatgatttttacatc 179  Q
    |||||| ||||||| |||||    
T  21329349 aaataagtgattttcacatc 21329330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 26017778 - 26017626
Alignment:
Q  95 atgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnn 192  Q
    |||||||| ||| ||||||||||| | |||| ||||| ||| ||| |||| |||||||| ||||||||||||| ||||||| |||||| || ||          
T  26017778 atgatttatggttaatttttgacctaaaatcacccctctaattcgtttttttatttcccttttattgaaataagtgattttcacatctgttacg-ttttt 26017680  T
Q  193 nattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
     ||||||||||||| || |||| |||| |  |||||||||| ||||||||||||    
T  26017679 tattttgtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcgtctttgtg 26017626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 33530646 - 33530495
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  ||| ||||||||||| || ||| || | ||||||  | ||||||||  |||||||||||||||||  |||||| || | ||||| ||    
T  33530646 ttctctcttgtgagccatcaccaaaaccatagtttcttttacttcatctatcaaagaggggtgatttagggtcaattt--gacccaaaaccacccctcta 33530549  T
Q  135 actcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    || |||||| || ||||  ||| |||||||||| ||||||||||||||||||||    
T  33530548 acccgtttttctttttcttttttattgaaataagtgatttttacatctatttcg 33530495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 8319284 - 8319400
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttctatttcc-ctttattgaaataaat 167  Q
    |||||||| || |||||||||||  ||||||| |||||| |||||||||| |||| ||| | |||||||  |||||| |||||  |||||| |||||| |    
T  8319284 ttctcctttatccaccaaagaggagtgatttatggtcaacttttgacccaaaatcacccatgtaactcgttttttctttttccattttattaaaataagt 8319383  T
Q  168 gatttttacatctattt 184  Q
    |||||| |||| |||||    
T  8319384 gattttcacatatattt 8319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 37399551 - 37399711
Alignment:
Q  37 tctctcttgtatgccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttg----------acccataatc 125  Q
    ||||||||||  |||||||| |||| |||||||| |||| |||||| ||||||||| |  ||||||||||| |||||||           ||| | ||||    
T  37399551 tctctcttgtgagccgtcacgcaaaccctaatttcttcttcttcatccaccaaagacgggtgatttagggttaattttttttttttttttacctaaaatc 37399650  T
Q  126 gcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctattt 184  Q
     ||||| ||||||||||| || ||||||||| |||||||||||||||||| ||||||||||    
T  37399651 acccctctaactcgtttttctctttcccttttattgaaataaatgattttcacatctattt 37399711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 29804814 - 29804710
Alignment:
Q  77 ttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccctt-tattgaaataaatgattttt 174  Q
    ||||| |||||||||||  || |||||||||||||||||||||  |||| ||||| ||| ||| ||||||  ||||||| |||| |||||| |||||||     
T  29804814 ttcatccaccaaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaaatcgtttttctccttcccttctatttaaataagtgattttc 29804715  T
Q  175 acatc 179  Q
    |||||    
T  29804714 acatc 29804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 42490713 - 42490849
Alignment:
Q  112 tttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgattttt-acatctatttcgnnnnnnnattttgtgatttcat 208  Q
    ||||||||| |||| ||||| ||||||| |||||| |||||| ||||| ||||||| |||||||| ||||||||||||       |||||||||||||||    
T  42490713 tttgacccaaaatcacccctctaactcgtttttctttttcccttttatcgaaataagtgatttttcacatctatttcg-ttctttattttgtgatttcat 42490811  T
Q  209 catctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    | |||| |||  || |||||||||| || | |||||||    
T  42490812 cgtcttcgtgtgacgttggtttgttcgttgcctttgtg 42490849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 43483640 - 43483687
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  43483640 ttttctatttcccttttattgaaataagtgattttcacatctatttcg 43483687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 9933888 - 9933934
Alignment:
Q  141 tttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  9933888 tttctatttcccttttattaaaataagtgatttttacatctatttcg 9933934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 39090156 - 39090202
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttc 185  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  39090156 ttttctatttcccttttattgaaataagtgattttcacatctatttc 39090202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 41748640 - 41748526
Alignment:
Q  76 cttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg---ttttcta-tttccctttattgaaataaatgatt 171  Q
    |||||||||| |||||| | ||||||| ||||||||||||| ||| |||| | ||| ||| | |   ||||||| ||||| |||||| |||||  |||||    
T  41748640 cttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcactcctctaaattgtttttttctattttccttttattaaaataggtgatt 41748541  T
Q  172 tttacatctatttcg 186  Q
    || ||||||||||||    
T  41748540 ttcacatctatttcg 41748526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 43807269 - 43807209
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttcccttt 155  Q
    ||||||| ||||||||||||||||| |||| || || ||||||| ||||||||||| ||||    
T  43807269 tgatttatggtcaatttttgacccaaaatcacctctctaactcgtttttctatttctcttt 43807209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 31874003 - 31874230
Alignment:
Q  22 tctcttttccctttttctctc--ttgtatgccgtcaccaaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc 119  Q
    |||||||||||||| ||||||  ||||  |||||||||||| |||| ||| ||||||||||| || |||||||   ||||||||||||||||||||||||    
T  31874003 tctcttttccctttctctctcaattgtgagccgtcaccaaaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgaccc 31874102  T
Q  120 ataatcgcccctttaactcgtttt--ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgt 217  Q
    | |||| ||||| |||||||||||  || || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||  || |||||||    
T  31874103 aaaatcacccctctaactcgtttttccttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgattttgtcgtctttgt 31874201  T
Q  218 gcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| |||||||||| ||||||||||||    
T  31874202 gcaacgttggtttgttcgtcgtctttgtg 31874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 9269951 - 9270167
Alignment:
Q  32 ctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccc 130  Q
    |||||| ||||||||  |||||||| ||||| ||| ||| ||||||||||| |||||||||||  ||||||| | ||||||||||||||| |||| ||||    
T  9269951 ctttttatctcttgtgagccgtcacgaaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccc 9270050  T
Q  131 tttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggt 228  Q
    | ||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||       ||||||||||||| |  |||| |||| || |||||    
T  9270051 tctaactcgtttttctctttcccttttattgaaataagtgattttcacatctatttcg-ttttttattttgtgatttcgttgtcttcgtgcgacgttggt 9270149  T
Q  229 ttgtttgtcgtctttgtg 246  Q
    ||||| ||||||||||||    
T  9270150 ttgttcgtcgtctttgtg 9270167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 36545934 - 36545749
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||| ||| ||||||||||| ||||||||||| |||||||| ||||||||| |||||||  ||| ||||| ||||||| |||||| |||||| |||||||    
T  36545934 cctagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctctaactcgtttttctctttcccttttattg 36545835  T
Q  160 aaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||| ||||||| ||||||||||||       ||||||||||||  || ||||||||| || |||||||||| ||||||||||||    
T  36545834 aaataagtgattttcacatctatttcg-ttttttattttgtgattttgtcgtctttgtgcgacgttggtttgttagtcgtctttgtg 36545749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 9992598 - 9992751
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  ||||||||||| ||| |||||| ||||||||||||||  | || ||  ||||||||||||||||||||||||| |||| ||||| |    
T  9992598 tttctctcttgtgagccgtcaccaagaccataatttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcacccctct 9992697  T
Q  134 aactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttc 185  Q
    |||||| |||||| |||||| ||||||||||||| ||||||| |||||||||||    
T  9992698 aactcgtttttctctttcccttttattgaaataagtgattttcacatctatttc 9992751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 8054927 - 8054775
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccctt-tattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||| |||   |||| ||||||| ||||||||||||||| ||||||||||| ||||||| |||||| || ||           
T  8054927 tgatttagggtcaatttttgacccaaaattatccctctaactcgtttttctatttcccttatattgaaataagtgattttcacatctgttacgttttttt 8054828  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  8054827 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 8054775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 44295286 - 44295462
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttccctttattgaaataaatg 168  Q
    ||||||||||| || ||||||||  ||||||||||||||||||||||||| ||||  | || ||||| |||||  || || |  ||||||||||||| ||    
T  44295286 ttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttcctttttattgaaataagtg 44295385  T
Q  169 atttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  44295386 attttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 44295462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 32256901 - 32256748
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaat-ttttgacccataatcgccccttt 133  Q
    |||||||||| | ||||||| ||||| |||| ||| |||  |||||| |||||||||||  ||||||||||||||| |||| ||||| |||| ||||| |    
T  32256901 ttctctcttgga-gccgtcatcaaaatcctagttttttcatcttcatccaccaaagaggggtgatttagggtcaatttttttacccaaaatcacccctct 32256803  T
Q  134 aactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||| | |||| |||||||| ||||||||||||| ||||||| ||||||||||||    
T  32256802 aacttgtttttttatttcccttttattgaaataagtgattttcacatctatttcg 32256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 10042730 - 10042803
Alignment:
Q  70 attctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  10042730 attctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctaactcgtttt 10042803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 16937506 - 16937366
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    ||||||| ||||||| || ||| ||| ||||||| |||||||||||  ||||||||||||||||||||| ||| ||||  |||| ||||| | |||||||    
T  16937506 gccgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcatccctctaacttgtttttcta 16937407  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| |||| | |||||| ||||||  ||||||||||||    
T  16937406 tttcccttttacttaaataagtgatttacacatctatttcg 16937366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 37658917 - 37659053
Alignment:
Q  53 tcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttc 150  Q
    ||||||||||| |||||| ||| | ||||| |||||||||||  |||||||||||||||||||||| || |||| ||||| ||| | | |||| ||||||    
T  37658917 tcaccaaaaccctaattttttcactttcatccaccaaagaggggtgatttagggtcaatttttgacacaaaatcacccctctaatttgtttttatatttc 37659016  T
Q  151 cc-tttattgaaataaatgatttttacatctatttcg 186  Q
    || ||||||||||||| ||||||  || |||||||||    
T  37659017 ccttttattgaaataagtgatttacacgtctatttcg 37659053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 13864320 - 13864446
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||| ||| |||||||||||| | ||||||||  ||||||| |||||| |||||| ||| |||| ||  | ||||||| |||| |||||||| |||||||    
T  13864320 cctagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacctatgtaactcgtttttttatttcccttttattg 13864419  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||| ||||||||||||    
T  13864420 aaataagtgattttcacatctatttcg 13864446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 15665481 - 15665626
Alignment:
Q  44 tgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-tt 141  Q
    |||| |||||||||||||| ||| ||| ||  ||||||| || ||||||||  |||||||||||||| ||||||| || |||| ||||| ||||| | ||    
T  15665481 tgtaagccgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaacttgttt 15665580  T
Q  142 ttctatttc-cctttattgaaataaatgatttttacatctatttcg 186  Q
    |||| |||| | ||||||||||||| | ||||| ||||||||||||    
T  15665581 ttctctttcacttttattgaaataagtaattttcacatctatttcg 15665626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 31147944 - 31147828
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatg 168  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||| ||| || | | | ||||| ||||||  ||||| |||||||| |||| ||    
T  31147944 ttctccttcattcatcaaagaaggatgatttagggtcaatttttgacccaaaattgctcatct-actcgtttttctcgttcccttttattgacataagtg 31147846  T
Q  169 atttttacatctatttcg 186  Q
    ||||| ||||||||||||    
T  31147845 attttcacatctatttcg 31147828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 37719812 - 37719938
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgttttctat---ttccctttatt 158  Q
    |||| ||| ||||||||||| |||||| || |  ||||||||||||||||||||| | | |||| |   ||||||||||||| |||   |||  ||||||    
T  37719812 cctagtttcttctccttcatccaccaaggacgggtgatttagggtcaatttttgaactaaaatcacttttttaactcgttttttatcttttcattttatt 37719911  T
Q  159 gaaataaatgatttttacatctatttc 185  Q
    ||||||||||||||| |||||||||||    
T  37719912 gaaataaatgattttcacatctatttc 37719938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 23766676 - 23766827
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  | |||||| ||||| ||| ||| |||| |||||| |||||||||| | ||||||| ||||||||||||||||| |||| |||   ||    
T  23766676 ttctctcttgtgagtcgtcacaaaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc--ata 23766773  T
Q  135 actcg-ttttcta-tttccctttattgaaataaatgatttttacatctatttcg 186  Q
    ||||| ||||||| ||||  |||||| |||||| ||||||| |||| |||||||    
T  23766774 actcgtttttctattttcattttattaaaataagtgattttcacatttatttcg 23766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 37129838 - 37129761
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaattt 112  Q
    ||||||||||||  | |||||| ||| |||| ||||||||||||||| |||||| ||||| |||||| ||||||||||    
T  37129838 tttctctcttgtgaggcgtcacaaaaccctagtttattctccttcatccaccaaggaggtgtgattttgggtcaattt 37129761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 5989625 - 5989717
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccctttat-tgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||||||||||| ||||| |||| |  || ||||||| |||||| ||||||||| | |||||||| ||||||| ||||||||||||    
T  5989625 tgatttagggtcaatttttaacccaaaatcacatctctaactcgtttttctctttccctttttatgaaataagtgattttcacatctatttcg 5989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14327441 - 14327497
Alignment:
Q  63 ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc 119  Q
    ||||||| ||||||||||| |||||||||||  || |||||||||||||||||||||    
T  14327441 ctaatttcttctccttcatccaccaaagaggggtggtttagggtcaatttttgaccc 14327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 26937482 - 26937610
Alignment:
Q  58 aaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttccc-ttt 155  Q
    |||||||| ||| || |||| ||| |||||||||||  | ||||||||| || ||||||| || |||| ||||| ||||||||||| || |||||| |||    
T  26937482 aaaacctagtttcttatcctgcatccaccaaagaggggttatttagggttaagttttgactcaaaatcacccctctaactcgttttcctttttccctttt 26937581  T
Q  156 attgaaataaatgatttttacatctattt 184  Q
    |||||||||| | ||| | ||||||||||    
T  26937582 attgaaataagtaattctcacatctattt 26937610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 16996987 - 16996857
Alignment:
Q  114 tgacccataatcgcccctttaactcgttttcta-tttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatc 212  Q
    ||||||| |||| ||||| |||||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||||       ||||||||||||| || ||    
T  16996987 tgacccaaaatcacccctctaactcgttttctattttccttttattgaaataagtga-tttcacatctatttcg-ttttttattttgtgatttcgtcgtc 16996890  T
Q  213 tttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    || |||| || |||| ||||| ||||||||||||    
T  16996889 ttcgtgcgacgttgg-ttgttcgtcgtctttgtg 16996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 2628946 - 2628995
Alignment:
Q  133 taactcgttttctatttccc-tttattgaaataaatgatttttacatcta 181  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  2628946 taactcgttttctatttcccttttattgaaataagtgattttcacatcta 2628995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 32061755 - 32061812
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc 119  Q
    |||||||| ||||||||||| |||||||||||  |  |||||||||||||||||||||    
T  32061755 cctaatttcttctccttcatccaccaaagaggggtagtttagggtcaatttttgaccc 32061812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 41996585 - 41996691
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcg 238  Q
    |||| ||||||||||| |||||||||| ||||||| |||||| || ||       |||||||||||||||| |||| |||| || |||||||||| ||||    
T  41996585 ttttgtatttcccttttattgaaataagtgattttcacatctgttacgtttttt-attttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcg 41996683  T
Q  239 tctttgtg 246  Q
    ||||||||    
T  41996684 tctttgtg 41996691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 3680891 - 3681010
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttg--acccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaa 166  Q
    ||||| ||||| |||||||||||  |||||||| ||||||||||   ||||| |||| |  || ||||| ||||| || ||| ||||| |||||||||||    
T  3680891 ttctctttcatccaccaaagaggggtgatttagagtcaatttttttcacccaaaatcacttctctaacttgtttttctcttttccttttattgaaataaa 3680990  T
Q  167 tgatttttacatctatttcg 186  Q
    ||||||| ||||||||||||    
T  3680991 tgattttcacatctatttcg 3681010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 32920747 - 32920798
Alignment:
Q  195 ttttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||||||||| || |||| |||||||| || |||||||||||||||||||    
T  32920747 ttttgtgatttcgtcgtcttagtgcaacaatgttttgtttgtcgtctttgtg 32920798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 284624 - 284502
Alignment:
Q  66 atttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttct-atttccctttattgaaat 163  Q
    |||| ||||| ||||| ||| ||||||   ||||||| | ||||||||||||||| |||  || |||||||||| |||||| |||| | ||| |||||||    
T  284624 atttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaat 284525  T
Q  164 aaatgatttttacatctatttcg 186  Q
    |  ||||||| ||||||||||||    
T  284524 atgtgattttcacatctatttcg 284502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 631253 - 631375
Alignment:
Q  66 atttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttct-atttccctttattgaaat 163  Q
    |||| ||||| ||||| ||| ||||||   ||||||| | ||||||||||||||| |||  || |||||||||| |||||| |||| | ||| |||||||    
T  631253 atttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaat 631352  T
Q  164 aaatgatttttacatctatttcg 186  Q
    |  ||||||| ||||||||||||    
T  631353 atgtgattttcacatctatttcg 631375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 817065 - 817187
Alignment:
Q  66 atttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttct-atttccctttattgaaat 163  Q
    |||| ||||| ||||| ||| ||||||   ||||||| | ||||||||||||||| |||  || |||||||||| |||||| |||| | ||| |||||||    
T  817065 atttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaat 817164  T
Q  164 aaatgatttttacatctatttcg 186  Q
    |  ||||||| ||||||||||||    
T  817165 atgtgattttcacatctatttcg 817187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 5917843 - 5917769
Alignment:
Q  112 tttgacccataatcgcccctttaactcgttttctatttccctttattgaaataaatgatttttacatctatttcg 186  Q
    ||||||||| |||| ||||| || |||||||||| |||||||||| | |||  | ||||||| ||||||||||||    
T  5917843 tttgacccaaaatcacccctctagctcgttttctctttccctttaattaaaatattgattttcacatctatttcg 5917769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 32412797 - 32412875
Alignment:
Q  107 caatttttgacccataatcgcccctttaactcgttttctatttcccttt-attgaaataaatgatttttacatctattt 184  Q
    |||||||||| ||| |||| ||||| | ||||||||||  ||||||||| |||||||||| ||||||| |||| |||||    
T  32412797 caatttttgatccaaaatcacccctctcactcgttttccctttcccttttattgaaataagtgattttcacatttattt 32412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 14115984 - 14115883
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  ||||||||| |||| ||| ||  ||||| ||||| ||||||||| |  ||||||||| |||||||||||||||    
T  14115984 tctcttttcccttt--ctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgaccca 14115888  T
Q  121 taatc 125  Q
     ||||    
T  14115887 aaatc 14115883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 35501952 - 35501786
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    |||||||||||||| ||||||||||  ||||||||| ||| |||| ||| ||||||||||| |||||||||||  ||||||||||| |||||||||||||    
T  35501952 tctcttttccctttctctctcttgtgagccgtcaccgaaatcctagtttcttctccttcatccaccaaagaggg-tgatttagggttaatttttgaccca 35501854  T
Q  121 taatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
     |||| ||||| ||||||| |||||| |||||| |||| |||||||||||||||| ||||||||||||    
T  35501853 aaatcacccctctaactcgtttttctctttcccttttactgaaataaatgattttcacatctatttcg 35501786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 20201239 - 20201026
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  |||||||| |||||| || ||| ||||||||||| |||||||||||  ||||||||||||||||||||||||| |||| ||||| |    
T  20201239 tttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctct 20201140  T
Q  134 aactcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttg 231  Q
    |||||| |||||| |||| | ||||||||||||| ||||||| |||||||||| |       ||||| ||||||| || | || |||| |||||||||||    
T  20201139 aactcgtttttctctttcacttttattgaaataagtgattttcacatctattttg-ttttttattttatgatttcgtcgttttcgtgcgacattggtttg 20201041  T
Q  232 tttgtcgtctttgtg 246  Q
    |||||| ||||||||    
T  20201040 tttgtcatctttgtg 20201026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 20203421 - 20203208
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  |||||||| |||||| || ||| ||||||||||| |||||||||||  ||||||||||||||||||||||||| |||| ||||| |    
T  20203421 tttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctct 20203322  T
Q  134 aactcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttg 231  Q
    |||||| |||||| |||| | ||||||||||||| ||||||| |||||||||| |       ||||| ||||||| || | || |||| |||||||||||    
T  20203321 aactcgtttttctctttcacttttattgaaataagtgattttcacatctattttg-ttttttattttatgatttcgtcgttttcgtgcgacattggtttg 20203223  T
Q  232 tttgtcgtctttgtg 246  Q
    |||||| ||||||||    
T  20203222 tttgtcatctttgtg 20203208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 1165576 - 1165364
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||||||||||||||||||| |||| ||||| ||    
T  1165576 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 1165477  T
Q  135 actcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| | |||||| |||||| ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||    
T  1165476 acttgtttttctttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgt 1165378  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  1165377 tcgtcgtctttgtg 1165364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 21803452 - 21803676
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  ||||||||||||||| || ||| |||||||||||  ||||||||||  ||||| || ||||||||||||||||    
T  21803452 tctcttttcccttt--ctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttttgaccca 21803549  T
Q  121 taatcgcccctttaactcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtg 218  Q
     |||| ||||| ||||||| |||||| |||| | |||||||||| || ||||||| ||||||||||||       ||||||||||||| |  |||| |||    
T  21803550 aaatcacccctctaactcgtttttctctttctcttttattgaaacaagtgattttcacatctatttcg-ttttttattttgtgatttcgtagtcttcgtg 21803648  T
Q  219 caacattggtttgtttgtcgtctttgtg 246  Q
    | ||||||||||||| ||||||||||||    
T  21803649 cgacattggtttgttcgtcgtctttgtg 21803676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 50519723 - 50519876
Alignment:
Q  35 tttctctcttgtatgccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  |||||||| |||| |||| ||| ||||||||||| ||||||||| |  ||||||||||||||||||||||||| |||| ||||| |    
T  50519723 tttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctct 50519822  T
Q  134 aactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||||||| ||||||||||||| ||| ||| ||||||||||||    
T  50519823 aactcgtttttctatttcccttttattgaaataagtga-tttcacatctatttcg 50519876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 22843999 - 22844198
Alignment:
Q  50 ccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg---ttttct 145  Q
    |||||||||||||| || |||||||||||||||||| ||||||||  ||||||| ||||||||||||||||| |||| ||||| |||||||   ||||      
T  22843999 ccgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcacccctctaactcgttcttttta 22844098  T
Q  146 atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
    |||  | |||||||||||||||||||||  |||||||||          ||| ||||||||||| |||| |||| |||||| |||||| |||||||||||    
T  22844099 attatcttttattgaaataaatgattttcgcatctattt-tattttttctttcgtgatttcatcgtcttagtgcgacattgttttgttcgtcgtctttgt 22844197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 246
Target Start/End: Original strand, 43029632 - 43029829
Alignment:
Q  51 cgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctat 147  Q
    ||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||| ||| ||||||||||| |||| ||||| ||||| |||||  || |    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaacttgtttttccttt 43029731  T
Q  148 ttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    | || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  43029732 tcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 43029829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 20251577 - 20251737
Alignment:
Q  28 ttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtc-aatttttgacccataatc 125  Q
    |||||||| ||||||||||  ||||||||| ||||| || ||||||||||||||| |||||||||||  |||||||||||| | ||||| ||||| ||||    
T  20251577 ttccctttctctctcttgtgagccgtcaccgaaaccctagtttattctccttcatccaccaaagaggggtgatttagggtcgatttttttacccaaaatc 20251676  T
Q  126 gcccctttaactcg-ttttctatttcccttt-attgaaataaatgatttttacatctattt 184  Q
     ||| | ||||||| |||||| ||||||||| |||||||||| ||||||| | ||||||||    
T  20251677 acccttctaactcgtttttctctttccctttgattgaaataagtgattttcatatctattt 20251737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 41882561 - 41882449
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccctt-tattg 159  Q
    |||| ||| ||||||||||| || ||||||||  ||||||||||||||||||||||||| |||  ||||| ||||||| ||||||||||||||| |||||    
T  41882561 cctagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaactcgtttttctatttcccttgtattg 41882462  T
Q  160 aaataaatgattt 172  Q
    |||||| ||||||    
T  41882461 aaataagtgattt 41882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 33978039 - 33977893
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnn 192  Q
    ||||||| ||||||||||||||||| ||||   |||||||||||||||  |||||||||||| |||||||||| |||||||||||||||||| |          
T  33978039 tgatttaaggtcaatttttgacccaaaatc---cctttaactcgttttttctatttcccttttattgaaataagtgatttttacatctattttg---ttt 33977946  T
Q  193 nattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
     |||||||||||||||| |||| |||| || |||| ||||| ||||||||||||    
T  33977945 tattttgtgatttcatcgtcttcgtgcgacgttgg-ttgttcgtcgtctttgtg 33977893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 25374261 - 25374098
Alignment:
Q  24 tcttttccctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccata 122  Q
    |||||||||||| ||||| ||||  |||||||| ||||| ||| ||| || |||||||||||| ||||| |  ||||||||||| ||||||||||| | |    
T  25374261 tcttttccctttctctcttttgtgagccgtcactaaaactctagtttcttttccttcattcac-aaagaagggtgatttagggttaatttttgacctaaa 25374163  T
Q  123 atcgcccctttaactcg-ttttct-atttccctttattgaaataaatgatttttacatctatttc 185  Q
    ||| ||||| ||||||| ||||||  ||||| ||| ||||||||| ||||||| |||||||||||    
T  25374162 atcacccctctaactcgtttttctcttttccttttcttgaaataagtgattttcacatctatttc 25374098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 42106046 - 42106199
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||| | ||||||||||||||| || ||| |||  |||||| |||||||||||  ||||||||||||||||||||||| | |||| ||| | ||    
T  42106046 ttctctcttgga-gccgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcacccatcta 42106144  T
Q  135 actcg--ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    ||  |  ||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  42106145 acctgttttttctatttcccttttattgaaataagtgattttcacatatatttcg 42106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 43839708 - 43839493
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  || ||||||  | |||| |||||||| || ||| ||||||||||||||| ||||| |  ||||||||||||||||||||| |||    
T  43839708 tctcttttcccttt--ctttcttgtcagtcgtcgccaaaaccctagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttga-cca 43839612  T
Q  121 taatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtg 218  Q
     | ||  |||| ||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||       ||||||||||||| ||||||| |||    
T  43839611 aagtc-accctctaactcgcttttctctttcccttttattgaaataagtgattttcacatctatttcg-ttttttattttgtgatttcgtcatcttcgtg 43839514  T
Q  219 caacattggtttgtttgtcgt 239  Q
    | |  |||||||||| |||||    
T  43839513 cgatgttggtttgttcgtcgt 43839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 22286902 - 22286777
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta-tttccctttattg 159  Q
    |||| ||| ||||||||||| |||||||||||  ||||||||||||||||||||||| | |||  ||||| ||||||| ||||||| ||||| |||||||    
T  22286902 cctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctctaactcgtttttctattttccttttattg 22286803  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| | | ||| ||||||||||||    
T  22286802 aaataagt-aatttcacatctatttcg 22286777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 40462191 - 40462022
Alignment:
Q  22 tctcttttccctttttctctc--ttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacc 118  Q
    |||||||||||||||||||||  ||||  | |||| |||||| |||| ||| ||||| ||||| ||||||||||   |||||||| ||||| ||||||||    
T  40462191 tctcttttccctttttctctcttttgtgagacgtcgccaaaaccctagtttcttctctttcatccaccaaagagtggtgatttagagtcaaattttgacc 40462092  T
Q  119 cataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    || |||| ||||| ||||| | |||||| |||||| ||||||||||||   | |||||||||||||||||    
T  40462091 caaaatcacccctctaacttgtttttctctttcccttttattgaaatacgcggtttttacatctatttcg 40462022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 37051586 - 37051666
Alignment:
Q  63 ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||  |||| ||||| ||| |||||||    
T  37051586 ctaatttcttctctttcatccaccaaagagggatgatttagggtcaatttttgaccctgaatcacccctctaaatcgtttt 37051666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 29776868 - 29776659
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||   ||||||| ||||||| | ||| ||||||||||| |||||||||||  ||||||||||||||               
T  29776868 tctcttttcccttt--ctctcttgtgaaccgtcactaaaaccttagttttttctccttcatccaccaaagaggggtgatttagggtcaa----------- 29776782  T
Q  121 taatcgcccctttaactcg-ttttctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgc 219  Q
     |||| ||||| ||||||| |||||| |||||||||| |||||||| || |||| ||||||||||||       ||||||||||||  ||||||||||||    
T  29776781 -aatcacccctctaactcgtttttctctttccctttactgaaataagtggttttcacatctatttcg--tttttattttgtgattttgtcatctttgtgc 29776685  T
Q  220 aacattggtttgtttgtcgtctttgt 245  Q
     || || ||||||| |||||||||||    
T  29776684 gacgtttgtttgttcgtcgtctttgt 29776659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 33076276 - 33076399
Alignment:
Q  71 ttctccttcattcaccaaagagg------tatgatttagggtcaatttttgacccataatcgcccctttaactcgttttcta--tttccctttattgaaa 162  Q
    |||||||||||||||||||||||      | ||||||||||| || |||||| ||| |||| ||||| |||||| |||||    ||||| ||||||||||    
T  33076276 ttctccttcattcaccaaagaggggtgattttgatttagggttaacttttgatccaaaatcacccctctaactcattttcctcttttccttttattgaaa 33076375  T
Q  163 taaatgatttttacatctatttcg 186  Q
    ||| ||||||||||||||||||||    
T  33076376 taagtgatttttacatctatttcg 33076399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 36540809 - 36540701
Alignment:
Q  77 ttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgttttctatttccc-tttattgaaataaatgattttta 175  Q
    ||||| |||||||||||  | ||| ||||||| ||||||||||| | ||  || | |||||||||||||||||||| ||||||||||||| ||||||| |    
T  36540809 ttcatccaccaaagagggttaattgagggtcagtttttgacccaaagtcaaccttctaactcgttttctatttcccttttattgaaataagtgattttca 36540710  T
Q  176 catctattt 184  Q
    ||| |||||    
T  36540709 catttattt 36540701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 40797015 - 40797120
Alignment:
Q  83 caccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttcccttt-attgaaataaatgatttttacatc 179  Q
    ||||||| |||  ||||||||||| |||||| || ||| |||| ||||| ||||| |||||  |||||||||||| |||||||||||||||||| |||||    
T  40797015 caccaaaaaggggtgatttagggttaatttt-gagccaaaatcacccctctaacttgttttttctatttcccttttattgaaataaatgattttcacatc 40797113  T
Q  180 tatttcg 186  Q
    |||||||    
T  40797114 tatttcg 40797120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 47914773 - 47914563
Alignment:
Q  26 ttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataat 124  Q
    |||| ||||| ||||| ||||  ||||||||  ||| |||||||| ||||||||||| |||||||||||  |||||||||||||||         | |||    
T  47914773 tttttcctttctctcttttgtgagccgtcacagaaatcctaatttcttctccttcatccaccaaagaggggtgatttagggtcaat---------aaaat 47914683  T
Q  125 cgcccctttaactcgttttctatttcc-ctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaaca 223  Q
    | ||||| ||||||||||| | |||||  |||||||||| || ||||||| ||||||||||||       ||||||||||||| || |||| |||| ||     
T  47914682 cacccctctaactcgttttttctttccattttattgaaaaaagtgattttcacatctatttcg-ttttttattttgtgatttcgtcgtcttcgtgcgacg 47914584  T
Q  224 ttggtttgtttgtcgtctttgt 245  Q
    |||| |||||||||||||||||    
T  47914583 ttgg-ttgtttgtcgtctttgt 47914563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 32238069 - 32237964
Alignment:
Q  140 ttttctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgt 239  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||||        ||||||||||||  |||||||||||| |  |||||||||| |||||    
T  32238069 ttttctctttccctttattgaaataagtgattttcatatctatttc-attttttattttgtgattttgtcatctttgtgcgatgttggtttgttcgtcgt 32237971  T
Q  240 ctttgtg 246  Q
    |||||||    
T  32237970 ctttgtg 32237964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 913485 - 913343
Alignment:
Q  49 gccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaac---tcgttttc 144  Q
    |||||||||||||||| | ||| |||  |||||| |||||||||||  | ||| |  |||||||||||||||| |||| ||||| ||||   |  |||||    
T  913485 gccgtcaccaaaaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcacccctctaacatgtttttttc 913386  T
Q  145 tatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||    
T  913385 tatttccctttttttgaaataagtgattttcacatctatttcg 913343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 27056086 - 27056000
Alignment:
Q  21 ctctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggt 106  Q
    ||||||||| ||||| ||||| ||||  ||||||||||||| |||||||| ||||||||||| ||||| ||| |  |||||||||||    
T  27056086 ctctctttttcctttctctcttttgtgagccgtcaccaaaaccctaattttttctccttcatccaccagagaagggtgatttagggt 27056000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 53426780 - 53426884
Alignment:
Q  77 ttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgttttctatttcccttt-attgaaataaatgattttta 175  Q
    ||||| || |||||| | |||||||||||||||||||| || || |||| ||||| |||||||||||     || |||| |||||||||| ||||||| |    
T  53426780 ttcatccatcaaagatggatgatttagggtcaattttttacgcaaaatcacccctctaactcgtttt-----tctctttcattgaaataagtgattttca 53426874  T
Q  176 catctatttc 185  Q
    ||||||||||    
T  53426875 catctatttc 53426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 1220367 - 1220255
Alignment:
Q  63 ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattga 160  Q
    ||||||| ||||||||||   | ||||||||  ||||||||| |||||||||||  || |||| ||||| ||||||| |||||| |||||| ||| ||||    
T  1220367 ctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttga 1220268  T
Q  161 aataaatgatttt 173  Q
    ||||| |||||||    
T  1220267 aataagtgatttt 1220255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 43242781 - 43242853
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||||||||||||| |||| | |  ||||||||||||| |||||||| || |||| ||| |||||||||||||    
T  43242781 ttctccttcattcatcaaataagggtgatttagggtcagtttttgacacaaaatcacccatttaactcgtttt 43242853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 28995380 - 28995333
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  28995380 ttttctatttcccttttattgaaataagtgattttcacatctatttcg 28995333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 14741431 - 14741353
Alignment:
Q  109 atttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttc 185  Q
    |||||| ||||| |||| || || ||||||||||| || ||||||||| |||||||||| ||||||| |||||||||||    
T  14741431 atttttaacccaaaatcacctctctaactcgtttttctctttcccttttattgaaataagtgattttcacatctatttc 14741353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 1806604 - 1806532
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||| |||||| |||||||||||  || |||||||||||||||||| ||  |||| ||||| ||| |||||||    
T  1806604 ttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcacccctctaaatcgtttt 1806532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 45664224 - 45664284
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttcccttt 155  Q
    ||||||||| |||| |||||||||| |||| ||||| ||||||| ||||||||||| ||||    
T  45664224 tgatttaggatcaaattttgacccaaaatcacccctctaactcgtttttctatttctcttt 45664284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 9661787 - 9661999
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||||||||||||||||||| |||| ||||| ||    
T  9661787 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 9661886  T
Q  135 actcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| | |||||| |||||| ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||    
T  9661887 acttgtttttctttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgt 9661985  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  9661986 tcgtcgtctttgtg 9661999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 4634230 - 4634429
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ct 145  Q
    ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||| ||||||||||||||||| |||| ||||| ||||| |||||  ||    
T  4634230 gccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaacttgtttttcct 4634329  T
Q  146 atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
     || || ||||||||||||| ||||||| |||||||||| |       | ||||||||||| || |||| |||| || |||||||||| |||||||||||    
T  4634330 tttcccttttattgaaataagtgattttcacatctattttgttttttaa-tttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 4634428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 16991819 - 16991958
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    ||||| ||||||||| || ||| ||||||||||| || |||||||   ||||||||||||||||||||||||| |||| ||| | ||||||| |||||||    
T  16991819 gccgttaccaaaaccctagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaactcgtttttcta 16991918  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttc 185  Q
    |||||| ||||||||||||| ||||||| |||||||||||    
T  16991919 tttcccttttattgaaataagtgattttcacatctatttc 16991958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 28588495 - 28588648
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||| ||||  ||||||||||||| |||| ||| ||||||||||| || || ||| |  ||||||||||||||||||||||||| |||| ||||| ||    
T  28588495 ttctcttttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctcta 28588594  T
Q  135 actcg-ttttctatttccc--tttattgaaataaatgatttttacatctatttc 185  Q
    ||||| |||||| ||||||  |||||||||||||||||||||  ||||||||||    
T  28588595 actcgtttttctctttccctttttattgaaataaatgattttcgcatctatttc 28588648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 43156713 - 43156858
Alignment:
Q  39 tctcttgtatgccgtcaccaaaacctaattta-ttctccttcattcaccaaagaggtatgattta-gggtcaatttttgacccataatcgcccctttaac 136  Q
    ||||||||  |||||||||||||| || |||  ||||||||||| |||||||||||  ||||||| |||||||||||||||||| |||| ||||| ||||    
T  43156713 tctcttgtgagccgtcaccaaaacttagttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcacccctctaac 43156812  T
Q  137 tcgttttctatttcc-ctttattgaaataaatgatttttacatcta 181  Q
     |||||| |||||||  ||||||||||||| ||||||| |||||||    
T  43156813 acgttttatatttcctttttattgaaataagtgattttcacatcta 43156858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 23067967 - 23067816
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||  |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| |||||| || ||           
T  23067967 tgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatctgttacg-tttttt 23067869  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  23067868 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 23067816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 1646122 - 1645981
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||||| |  |||||||| |||||| || ||| |||| |||||||||||||||||  |||||||||||| |||| |||||||| |||| ||||| |    
T  1646122 tttctctcttttgagccgtcactaaaaccctagtttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctct 1646023  T
Q  134 aactcg-ttttctatttc-cctttattgaaataaatgatttt 173  Q
    |||||| |||||| |||| | |||||||||||||||||||||    
T  1646022 aactcgtttttctctttctcttttattgaaataaatgatttt 1645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 54420865 - 54420740
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta-tttccctttattg 159  Q
    |||| ||| ||||||||||| ||||||||| |  ||||||||||||||||||||||||| |||| | ||| ||||||| ||||||| ||||| |||||||    
T  54420865 cctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcactcctctaactcgtttttctattttccttttattg 54420766  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| ||| ||| ||||||||||||    
T  54420765 aaataagtga-tttcacatctatttcg 54420740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 14542656 - 14542480
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttccctttattgaaataaatg 168  Q
    ||||||||||| || ||||||||  ||||||||||||||||||||||||| ||||  | || ||||| |||||  || || |  ||||||||||||| ||    
T  14542656 ttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttcctttttattgaaataagtg 14542557  T
Q  169 atttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  14542556 attttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 14542480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 34115796 - 34115619
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatg 168  Q
    ||||| |||||  |||||||||  || ||||||||||||||||||||||| |||| ||||| ||  ||| |||||| |||||| |||||||||| || ||    
T  34115796 ttctcattcatctaccaaagagagataatttagggtcaatttttgacccaaaatcacccctctagttcgtttttctctttcccttttattgaaagaagtg 34115697  T
Q  169 atttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||| ||||||||||       ||||||||||||| || |||| |||| || ||||| |||| || |||||||||    
T  34115696 atttttatatctatttcgtttttttattttgtgatttcgtcgtcttcgtgcgacgttggtatgttcgttgtctttgtg 34115619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 41486572 - 41486721
Alignment:
Q  98 atttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccctt-tattgaaataaatgatttttacatctatttcgnnnnnnnat 195  Q
    ||||||||||||||||||| ||| |||| ||||| ||||||| |||||| |||||||| |||||||||||  |||||| ||||||||||||       ||    
T  41486572 atttagggtcaatttttgatccaaaatcacccctctaactcgtttttctctttcccttatattgaaataagagattttcacatctatttcg-ttttttat 41486670  T
Q  196 tttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||  || ||||||||| |  |||||||||| ||||||||||||    
T  41486671 tttgtgattttgtcgtctttgtgcgatgttggtttgttcgtcgtctttgtg 41486721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 37869608 - 37869446
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  ||||||||||||||| || ||| ||||||||||| ||  |||||| | |||||||||||||||| || ||| |    
T  37869608 tctcttttcccttt--ctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagagatgtgatttagggtcaattgtttaccaa 37869511  T
Q  121 taatcgcccctttaactcgttttc-tatttcccttt-attgaaataaatgatttttacatctattt 184  Q
     ||||  |||| |||||||||||  | ||||||||| |||||||||| ||||||| ||||||||||    
T  37869510 -aatcatccctctaactcgtttttatctttcccttttattgaaataagtgattttcacatctattt 37869446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 3168973 - 3169114
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||||| || ||||| || ||||| ||| ||| |||| |||||||||||||||||   |||||||| ||||||| |||||||| |||| ||||| |    
T  3168973 tttctctcttttaagccgtgactaaaactctagttttttcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcacccctct 3169072  T
Q  134 aactcg-ttttctatttc-cctttattgaaataaatgatttt 173  Q
    |||||| |||| | |||| | |||||||||||||||||||||    
T  3169073 aactcgtttttttctttctcttttattgaaataaatgatttt 3169114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 31601441 - 31601326
Alignment:
Q  133 taactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggttt 230  Q
    ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||       ||||||||||||| || ||||  ||| || |||||||    
T  31601441 taactcgttttgctatttcccttttattgaaataagtgattttcacatctatttcgtttttttattttgtgatttcgtcgtcttcttgcgacgttggttt 31601342  T
Q  231 gtttgtcgtctttgtg 246  Q
    ||| ||||||||||||    
T  31601341 gttcgtcgtctttgtg 31601326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 46729086 - 46728889
Alignment:
Q  49 gccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    ||||||| |||||| ||| ||| ||| | ||||| |||||||||||  ||||||||||||||||||||||||| ||||  |||| ||| | | |||||||    
T  46729086 gccgtcatcaaaactctagttttttcactttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatc-accctctaatttgtttttcta 46728988  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
    |||||| ||||||||||||| ||||||  || |||||||||        |||||||||||| || |||| |||| || ||| |||||| |||||||||||    
T  46728987 tttcccttttattgaaataagtgatttacacgtctatttcgtttcttt-ttttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgt 46728889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 51646054 - 51646180
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||| ||| ||| ||||||| || |||||||  |||||||| ||||||||||| ||| | |||| ||||| ||| ||| |||| |||||||| |||||||    
T  51646054 cctactttcttcaccttcatccatcaaagagagatgatttatggtcaatttttaacctaaaatcacccctctaattcgtttttttatttcccttttattg 51646153  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||| ||||||||||||    
T  51646154 aaataagtgattttcacatctatttcg 51646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 6408409 - 6408520
Alignment:
Q  71 ttctccttcattcaccaaagaggta-tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaat 167  Q
    ||||||||||| |||||||||||   ||||| ||||||||||||| ||||| |||| || |||||||||| |||| |||||||| ||| ||||||||| |    
T  6408409 ttctccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacctctttaactcgtttttatatttcccttttgttgaaataatt 6408508  T
Q  168 gatttttacatc 179  Q
    |||||| |||||    
T  6408509 gattttcacatc 6408520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 38170239 - 38170131
Alignment:
Q  134 aactcgttttctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    |||||||||||| ||||||||| |||||||||| ||||||| |||| |||||||       |||| ||||||||||| |||| |||||| |||| |||||    
T  38170239 aactcgttttctttttccctttcattgaaataagtgattttcacatttatttcg-ttttttatttcgtgatttcatcgtcttagtgcaatattgttttgt 38170141  T
Q  233 ttgtcgtctt 242  Q
    ||||||||||    
T  38170140 ttgtcgtctt 38170131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 1657750 - 1657654
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccct 131  Q
    |||||||||||  | |||||| |||||| || ||| ||||||||||| || |||||||   ||||||||||||||||||||||||| |||| |||||    
T  1657750 ttctctcttgtgagacgtcactaaaaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccct 1657654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 29577265 - 29577157
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  ||||||||||||| ||||||||||| |||||||| ||  ||| |||  ||||||||||||| |||||||| || |||  ||||| ||    
T  29577265 ttctctcttgtgagccgtcaccaaaatcctaatttattttccttcatccataaaaaaggggtgatttagggtcactttttgactcaaaatatcccctcta 29577166  T
Q  135 actcgtttt 143  Q
     ||||||||    
T  29577165 tctcgtttt 29577157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 30416761 - 30416650
Alignment:
Q  76 cttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttcccttt-attgaaataaatgattt 172  Q
    |||||| ||||||| |||  | ||||| ||||||||||||| ||| |||| | ||| ||||| |||||  |||||||||||| |||||||||| ||||||    
T  30416761 cttcatccaccaaaaaggggtaatttatggtcaatttttgaaccaaaatcacacctctaacttgttttttctatttcccttttattgaaataagtgattt 30416662  T
Q  173 ttacatctattt 184  Q
    | ||||||||||    
T  30416661 tcacatctattt 30416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 35338356 - 35338481
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtt-ttctatttccctt-tattg 159  Q
    |||||||| |||||||||||  |||||||| | ||||||||||||||| |||||||||  |||| || || |||||| || |||| |||||||| | |||    
T  35338356 cctaattttttctccttcatctaccaaagatg-atgatttagggtcaaattttgaccctaaatcacctctgtaactcattcttctctttcccttatgttg 35338454  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| |||| ||||| | |||||||    
T  35338455 aaataagtgatgtttacttgtatttcg 35338481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 52555840 - 52555754
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctattt-ccctttattgaaataaatgatttttacatct 180  Q
    |||||||||| |||||||||||||| |||| || || ||||||| ||||||||||  | ||||||||||||| ||||||| ||||||    
T  52555840 tgatttagggacaatttttgacccaaaatcacctctctaactcgtttttctatttatcttttattgaaataagtgattttcacatct 52555754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 3673584 - 3673665
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||| ||| ||||| || || |||||||||||  ||||||||||||||||||||||||  |||| ||||| ||| |||||||    
T  3673584 cctactttcttctcatttatccaccaaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaaatcgtttt 3673665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 4622885 - 4622677
Alignment:
Q  41 tcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg 139  Q
    ||||||||| |||||||||||| ||| ||| |||| |||||| ||  |||||||  ||||||| ||||||||||||| ||| |||| || || || ||||    
T  4622885 tcttgtatgtcgtcaccaaaactctagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcacctctgtatctcg 4622787  T
Q  140 tttt-ctatttccctt--tattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgt 236  Q
    |||| || ||||| ||  |||| |||||| ||||||  |||| |||||||       ||||||||||||| || |||| |||| || | ||  |||||||    
T  4622786 tttttctctttcctttcttattaaaataagtgatttccacatttatttcgttcttttattttgtgatttcgtcgtcttagtgcgacgtgggagtgtttgt 4622687  T
Q  237 cgtctttgtg 246  Q
    ||||||||||    
T  4622686 cgtctttgtg 4622677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 46716960 - 46716862
Alignment:
Q  147 tttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| ||||||||||||| |||||||  |||||||| ||       ||||||||||||| ||||||| |||| || |||||||||| ||||||||||||    
T  46716960 tttccttttattgaaataagtgattttcgcatctattacgtttttt-attttgtgatttcgtcatcttcgtgcgacgttggtttgttcgtcgtctttgtg 46716862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 20961491 - 20961578
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtt 229  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||       |||||||||||||||| |||| |||| || ||||||    
T  20961491 ttttctatttcccttttattgaaataagtgattttcacatctatttcg---ttttattttgtgatttcatcgtcttcgtgcgacgttggtt 20961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 26576611 - 26576531
Alignment:
Q  107 caatttttgacccataatcgcccctttaactcgttttc-tatttccctttattgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||| |||| | ||| ||| | |||||  |||||||||||||| ||||||||||| || ||||||||||||    
T  26576611 caatttttgacccaaaatcacacctctaatttgtttttatatttccctttattcaaataaatgatattcacatctatttcg 26576531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 33020944 - 33020893
Alignment:
Q  195 ttttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||||||||||||||||| |||| ||  || |||||||||||||||||||    
T  33020944 ttttgtgatttcatcatcttagtgcgacgctgttttgtttgtcgtctttgtg 33020893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 40859686 - 40859733
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  40859686 ttttctatttcccttttattgaaataagtgattttcacatctatttcg 40859733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 9474689 - 9474623
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgattt 101  Q
    |||||||||||  ||||||||||||||| || ||| |||||||||||  |||||||||| |||||||    
T  9474689 ttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcaaccaaagagggatgattt 9474623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 4959694 - 4959622
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctatttccctttattgaaataaat 167  Q
    ||||||||||||||||||||| ||| ||||  | || ||||||  |||||| ||||| |||||||||||||||    
T  4959694 tgatttagggtcaatttttgatccaaaatcatcactctaactcatttttctctttccgtttattgaaataaat 4959622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 42972033 - 42972117
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta-tttccctttattgaaataaatgatttttacat 178  Q
    ||||||||||||||||||||||||| |||| | | | ||||| | ||||||| ||| | ||||||||||||| ||||||| ||||    
T  42972033 tgatttagggtcaatttttgacccaaaatcactcatctaacttgtttttctattttgcttttattgaaataagtgattttcacat 42972117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 9815 - 9675
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta 146  Q
    |||||||| |||||| || ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| | ||| ||||||| |||||||    
T  9815 gccgtcacaaaaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctctaactcgtttttcta 9716  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||| ||| ||||||| ||||||||||||    
T  9715 tttcccttttattgaattaagtgattttcacatctatttcg 9675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 25771379 - 25771591
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||||||||||||||||||| |||| ||||| ||    
T  25771379 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 25771478  T
Q  135 actcgtttt--ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| |||||  || || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||    
T  25771479 acttgtttttccttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgt 25771577  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  25771578 tcgtcgtctttgtg 25771591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 3390379 - 3390578
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ct 145  Q
    ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||||||||||||||||||| |||| ||||| ||||| |||||  ||    
T  3390379 gccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttcct 3390478  T
Q  146 atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
     || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||| |||||||||||    
T  3390479 tttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 3390577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 40125323 - 40125535
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  ||||||| |||||||| | ||| ||||||||||| |||||||||||  ||||||||||| ||||||||||||| |||| ||||| ||    
T  40125323 ttctctcttgtgagccgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctcta 40125422  T
Q  135 actcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| | ||||||||||| | ||||||||||||  ||||||| |||||||||| |       ||||||||||||  ||||||| ||||||| ||| |||||    
T  40125423 acttgtttttctatttctcttttattgaaatacgtgattttcacatctattttg-ttttttattttgtgattttgtcatcttagtgcaacgttgttttgt 40125521  T
Q  233 ttgtcgtctttgtg 246  Q
    || |||||||||||    
T  40125522 ttttcgtctttgtg 40125535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 27191493 - 27191363
Alignment:
Q  57 caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tt 154  Q
    |||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||| ||||||||||||| ||    
T  27191493 caaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttt 27191394  T
Q  155 tattgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||| ||| ||| ||||||||||||    
T  27191393 tattgaaataagtga-tttcacatctatttcg 27191363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 27841307 - 27841177
Alignment:
Q  57 caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tt 154  Q
    |||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||| ||||||||||||| ||    
T  27841307 caaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttt 27841208  T
Q  155 tattgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||| ||| ||| ||||||||||||    
T  27841207 tattgaaataagtga-tttcacatctatttcg 27841177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 42105932 - 42105781
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  |||||||| |||||| ||||||||| |||||||| |||||||||||  || |||||||||||||||||||||| |||| || || ||    
T  42105932 ttctctctcgttagccgtcacaaaaaccctaatttattttccttcatccaccaaagaggggtgctttagggtcaatttttgacccaaaatcaccactcta 42105833  T
Q  135 actcg-ttttctatttccc-tttattgaaataaatgatttttacatctattt 184  Q
    ||||| ||||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  42105832 actcgtttttctatttcccttttattgaaataagtgactttcacatctattt 42105781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 5930342 - 5930569
Alignment:
Q  21 ctctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc 119  Q
    |||||||||||||||  |||||||| | | ||||||||||| |||||| | ||||||||||| ||||||||||   ||||||||||| ||||||||||||    
T  5930342 ctctcttttccctttcgctctcttggaagtcgtcaccaaaatcctaatatcttctccttcatccaccaaagagaggtgatttagggttaatttttgaccc 5930441  T
Q  120 ataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgt 217  Q
    | ||||  |||| ||||||| |||||| |||||| ||||||  ||||| ||||||| ||||||||||||       ||||||||||||| || |||| ||    
T  5930442 aaaatcatccctctaactcgtttttctgtttcccttttatttcaataagtgattttcacatctatttcg-ttttttattttgtgatttcgtcgtcttcgt 5930540  T
Q  218 gcaacattggtttgtttgtcgtctttgtg 246  Q
    || |  |||||||||| ||||| ||||||    
T  5930541 gcgatgttggtttgttcgtcgtttttgtg 5930569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 6089854 - 6089980
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||||||| ||||||||||| || ||||||||  ||||||| ||||||||||||||||| |||| ||||| ||| ||| ||||||||||||| |||||||    
T  6089854 cctaatttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaattcgtttttctatttcccttttattg 6089953  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||| ||||||||||||    
T  6089954 aaataagtgattttcacatctatttcg 6089980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 27024304 - 27024107
Alignment:
Q  51 cgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctat 147  Q
    |||||||||||| ||| ||| ||||||||||| || |||||| |  ||||||||||||| ||||||||||| |||| ||||| ||||| |||||  || |    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaacttgtttttccttt 27024205  T
Q  148 ttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    | || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| ||||||||||||| ||||||||||||    
T  27024204 tcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacattggtttgttcgtcgtctttgtg 27024107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 25516427 - 25516638
Alignment:
Q  35 tttctctcttgtatgccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||| |||  |||||||| |||| |||| ||| ||||||||||| |||||||||||  ||||||||||||||| ||||||||| |||| ||||| |    
T  25516427 tttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctct 25516526  T
Q  134 aactc-gttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttg 231  Q
    |||||  ||||||||||||| ||||||||||||| ||| ||| ||||||||||||       ||||||||||||| || |||| |||| || |||| |||    
T  25516527 aactcatttttctatttcccttttattgaaataagtga-tttcacatctatttcg-ttttttattttgtgatttcttcgtcttcgtgcgacgttgg-ttg 25516623  T
Q  232 tttgtcgtctttgtg 246  Q
    || ||||||||||||    
T  25516624 ttcgtcgtctttgtg 25516638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 3602907 - 3603131
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  ||||||||||||| |||| ||| ||||||||||| || |||||| |  ||||||| |||||| ||||||| ||    
T  3602907 tctcttttcccttt--ctctcttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactca 3603004  T
Q  121 taatcgcccctttaactcg-ttttct-atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtg 218  Q
     |||| ||||| ||||| | ||||||  ||||| ||| ||||||||| ||||||| | ||||||||||       |||||||||||||||| |||| |||    
T  3603005 aaatcacccctctaacttgtttttctcttttccttttcttgaaataagtgattttcatatctatttcg-ttttttattttgtgatttcatcgtcttcgtg 3603103  T
Q  219 caacattggtttgtttgtcgtctttgtg 246  Q
    | || |||||||||| ||||||||||||    
T  3603104 cgacgttggtttgttcgtcgtctttgtg 3603131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 7640475 - 7640324
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| |||||| || ||           
T  7640475 tgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatctgttacg-tttttt 7640377  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  7640376 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 7640324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 37883587 - 37883740
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  |||||||| |||| | |||||| ||||||||||| |||||||||||  ||||||||||||||||||| | ||| |||| ||||| ||    
T  37883587 ttctctcttgtgagccgtcactaaaatcataatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttaatccaaaatcacccctcta 37883686  T
Q  135 actcg-ttttctatttcc-ctttattgaaataaatgatttttacatctatttcg 186  Q
    | ||| ||||||||||||  |||||| |||||| ||||||| ||||||||||||    
T  37883687 attcgtttttctatttcctttttattaaaataagtgattttaacatctatttcg 37883740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 41841900 - 41842094
Alignment:
Q  53 tcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccc-ataatcgcccctttaactcg-ttttctattt 149  Q
    |||||||||| ||| ||| ||||||||||| || || |||||  ||||||| |||||||||||||||| | |||| ||||||||||||| |||||| |||    
T  41841900 tcaccaaaactctagttttttctccttcatccatcatagagggttgatttatggtcaatttttgacccaaaaatcacccctttaactcgtttttctcttt 41841999  T
Q  150 ccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||| |||||||||||||  |||||| ||||||||||||        |||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  41842000 cccttttattgaaataagcgattttcacatctatttcgtttct---ttttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtg 41842094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 10588988 - 10589126
Alignment:
Q  52 gtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttctatt 148  Q
    |||||||||| |||| ||| |||  |||||| ||||||| |||  ||||||||||||||||||||||||| |||| ||||| ||||| |  |||||||||    
T  10588988 gtcaccaaaatcctagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgttttttctatt 10589087  T
Q  149 tccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||| ||||||||||||| ||||||| ||||||||||||    
T  10589088 tcccttttattgaaataagtgattttcacatctatttcg 10589126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 41176795 - 41176952
Alignment:
Q  35 tttctctcttgtatgccgtcac-caaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||| |||  |||||||| |||| |||| ||| ||||||||||| |||||||||||  ||||||||||||||||||||||||| || | ||| | |    
T  41176795 tttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatct 41176894  T
Q  134 aactcg--ttttctatttc-cctttattgaaataaatgat--ttttacatctatttcg 186  Q
    ||||||  ||||||||||| | ||||||||||||| ||||  ||| ||||||||||||    
T  41176895 aactcgttttttctatttctcttttattgaaataagtgatgatttcacatctatttcg 41176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 44167862 - 44167679
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttcccttt-attg 159  Q
    |||| ||| ||||||||||| |||||||||||  |||| || ||||||||||||||||| |||| ||||| ||||||| |||||||||| ||||| ||||    
T  44167862 cctagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaactcgtttttctattttcctttaattg 44167763  T
Q  160 aaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||| | | ||| ||||||||||||       ||||||||||||| || |||| |||| || |||| ||||| ||||||||||||    
T  44167762 aaataagt-aatttcacatctatttcg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttgg-ttgttcgtcgtctttgtg 44167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 3464921 - 3465031
Alignment:
Q  63 ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttcta-tttccctttattga 160  Q
    ||||||| ||||||||||| |||||||||||  ||||||||||||||||||||| ||| |||| || |  ||||||| ||||||| ||||| ||||||||    
T  3464921 ctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcaccacactaactcgtttttctattttccttttattga 3465020  T
Q  161 aataaatgatt 171  Q
    ||||| |||||    
T  3465021 aataagtgatt 3465031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 19581170 - 19581030
Alignment:
Q  49 gccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttct 145  Q
    |||||||||||||||| | ||| ||| ||||||| ||| |||||||  |||||| |||||||||||| || || |||| ||||| |||||||  |||| |    
T  19581170 gccgtcaccaaaaccttagttttttcaccttcatccactaaagaggggtgattttgggtcaatttttaacacaaaatcacccctctaactcgtttttttt 19581071  T
Q  146 atttccc-tttattgaaataaatgatttttacatctatttc 185  Q
    ||||||| ||||||||||||| ||||||| | |||||||||    
T  19581070 atttcccttttattgaaataagtgattttcatatctatttc 19581030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 26491273 - 26491388
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctatttccc-tttattgaaataaatg 168  Q
    |||||| |||| |||||||||||  | ||||| | ||||||||||||||| |||| ||||||||||||  ||||||||||||| ||||||||||||| ||    
T  26491273 ttctccatcatccaccaaagaggggtaatttaagttcaatttttgacccaaaatcacccctttaactcatttttctatttcccttttattgaaataagtg 26491372  T
Q  169 atttttacatctatttc 185  Q
    | ||| |||||||||||    
T  26491373 a-tttcacatctatttc 26491388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 43566810 - 43567019
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||| |||  ||||||||  ||||| || ||| ||||||||||| |||||||||||  ||||| ||||||||||||||||||| ||||  |||| |    
T  43566810 tttctctcctgtgagccgtcacacaaaccatagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatc-accctct 43566907  T
Q  134 aactcg-ttttctatttcc-ctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttg 231  Q
    |||||| ||||||||||||  ||||||||||||| ||| ||| ||||||||||||       ||||||||||||| || |||| |||| || |||| |||    
T  43566908 aactcgtttttctatttcctttttattgaaataagtga-tttcacatctatttcg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttgg-ttg 43567004  T
Q  232 tttgtcgtctttgtg 246  Q
    || ||||||||||||    
T  43567005 ttcgtcgtctttgtg 43567019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 34479878 - 34480043
Alignment:
Q  24 tcttttccctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccata 122  Q
    |||||||| ||| | |||||||   ||| |||||||||| ||| ||| ||||| ||||| || |||||| | ||||| |||||||||||||| ||||| |    
T  34479878 tcttttccttttctttctcttgcgagccatcaccaaaactctagtttcttctcattcatccatcaaagatggatgatatagggtcaattttttacccaaa 34479977  T
Q  123 atcgcccctttaactcg-ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||| ||| | |||| |  |||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  34479978 atcacccttataacacaattttctctttcccttttattgaaataagtgattttcacatctatttcg 34480043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 25623225 - 25623013
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    ||||||| |||  |||| |||||||||| || ||| || | |||||| || ||||||||  |||||||   ||||||||||||||| |||| ||| | ||    
T  25623225 ttctctcctgtgagccgccaccaaaaccctagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcacccatata 25623126  T
Q  135 actcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||||||||| || ||||||||| |||||||||| ||||||| |||||||||| |        ||| |||||||| || |||| |||| |||||| |||||    
T  25623125 actcgtttttctctttcccttttattgaaataagtgattttcacatctattttgttttttc-tttcgtgatttcgtcgtcttagtgcgacattgttttgt 25623027  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  25623026 tcgtcgtctttgtg 25623013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 9715664 - 9715512
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgtttt---ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnn 192  Q
    ||||||||||||||||||||| ||| ||||  | ||  ||||||||||    | ||||| ||||||||||||| ||||||| ||||||||||||          
T  9715664 tgatttagggtcaatttttgatccaaaatcatctctccaactcgttttttcttttttccttttattgaaataagtgattttcacatctatttcg-ttttt 9715566  T
Q  193 nattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
     ||||||||||||| || |||| || |||| ||| |||||||||| ||||||||    
T  9715565 tattttgtgatttcgtcgtcttagtacaacgttgatttgtttgtcatctttgtg 9715512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 29812755 - 29812642
Alignment:
Q  75 ccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctattt-ccctttattgaaataaatgattt 172  Q
    ||||||| || |||||||   |||||||||||||||||||||| || |||| ||||| ||||||  |||||| ||| || ||||||||||||| ||||||    
T  29812755 ccttcatccatcaaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaactcatttttctctttaccttttattgaaataagtgattt 29812656  T
Q  173 ttacatctatttcg 186  Q
      ||||||||||||    
T  29812655 ccacatctatttcg 29812642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 16880087 - 16879933
Alignment:
Q  87 aaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgttttctatttccctttattgaaataaatgatttttacatctatttcg 186  Q
    |||||||  ||||||  ||||||||||||||||| |||| ||||| | |||||||||    | || ||||||||||||| ||||||| |||| ||||| |    
T  16880087 aaagaggggtgatttttggtcaatttttgacccaaaatcacccctctcactcgtttt----tcccttttattgaaataagtgattttcacatttattttg 16879992  T
Q  187 nnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
           || ||||||||||||| |||| |||| || |||||||||| ||||||||||||    
T  16879991 tttttt-atcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 16879933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 5071389 - 5071338
Alignment:
Q  195 ttttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  5071389 ttttgtgatttcgtcatcttagtgcaacgttgttttgtttgtcgtctttgtg 5071338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 29734194 - 29734277
Alignment:
Q  106 tcaatttttgacccataatcgcccctttaactcgtttt--ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    |||| |||||||||| |||| | ||| |||||||||||  |||||||||||| |||||||||| ||||||| ||| ||||||||    
T  29734194 tcaaattttgacccaaaatcactcctctaactcgttttttctatttcccttttattgaaataagtgattttcacacctatttcg 29734277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 13268560 - 13268660
Alignment:
Q  87 aaagaggtatgatttagggtcaatttttgacccataatcgcccctt-taactcgttttctatttcccttta-ttgaaataaatgatttttacatctattt 184  Q
    |||||||  ||||||| ||||| ||||||| ||| |||| |||| | ||||||||||||| || ||||||  ||||||||| ||||||| ||||||||||    
T  13268560 aaagaggggtgatttatggtca-tttttgaaccaaaatcaccccctctaactcgttttctcttgcccttttgttgaaataagtgattttcacatctattt 13268658  T
Q  185 cg 186  Q
    ||    
T  13268659 cg 13268660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 16992115 - 16992066
Alignment:
Q  197 ttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| |||| |||| || |||||||||| ||||||||||||    
T  16992115 ttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 16992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 36507892 - 36507997
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttcta-tttccctttattg 159  Q
    |||| ||| ||||||||||| |||||||||    ||| ||||||||||||||||||||| |||| || || | ||||  ||||||| ||||| |||||||    
T  36507892 cctagtttcttctccttcatccaccaaagaatggtgacttagggtcaatttttgacccaaaatcacctctctgactcatttttctattttccttttattg 36507991  T
Q  160 aaataa 165  Q
    ||||||    
T  36507992 aaataa 36507997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 44951463 - 44951512
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatt 111  Q
    |||| ||| ||||||||||| |||||||||||  ||||||||||||||||    
T  44951463 cctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 15674102 - 15674046
Alignment:
Q  87 aaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||||||  ||||||||||||||||||||||||| |||| | ||| ||||| |||||    
T  15674102 aaagaggggtgatttagggtcaatttttgacccaaaatcactcctctaacttgtttt 15674046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 24500442 - 24500530
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaa 109  Q
    ||||| ||||| || |||||||||   ||||||||||||||| |||||| ||| ||||||| ||| ||||| |  ||||||||||||||    
T  24500442 tctctcttccccttctctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagatgggtgatttagggtcaa 24500530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 43929376 - 43929328
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctt 242  Q
    ||||||||||||| || |||| |||| ||||||||||||| ||||||||    
T  43929376 attttgtgatttcgtcgtcttcgtgcgacattggtttgttcgtcgtctt 43929328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 20844929 - 20845154
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggta-tgatttagggtcaatttttgaccc 119  Q
    ||||||||||||||  |||||||||  |||||||||||||||| | ||| |||||||| ||  ||||||||||   | ||| | ||||||||||||||||    
T  20844929 tctcttttcccttt--ctctcttgtgagccgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgaccc 20845026  T
Q  120 ataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgt 217  Q
    | |||| ||||| ||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||       ||||||||||||  ||||||| ||    
T  20845027 aaaatcacccctctaactcgtttttctctttcccttttattgaaataagtgattttcacatctatttcg-ttttttattttgtgattttgtcatcttcgt 20845125  T
Q  218 gcaacattggtttgtttgtcgtctttgtg 246  Q
    || ||||||||||||| ||||||||||||    
T  20845126 gcgacattggtttgttcgtcgtctttgtg 20845154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 16913249 - 16913415
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    |||||||||| ||| ||||| ||||  ||||||||||||||| || ||| ||||||||||| |||||||||||  ||||||||||||||||||||||||     
T  16913249 tctcttttcc-tttatctcttttgtgagccgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccg 16913347  T
Q  121 taatcgcccctttaactcg-ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
     |||| ||||| ||||||| |||||  |||| |||| |||||||||| ||||||| ||||||||||||    
T  16913348 aaatcacccctctaactcgtttttcactttcactttcattgaaataagtgattttcacatctatttcg 16913415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 549057 - 548838
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    |||||||||||||| ||| ||||||  ||||||| ||||| |||||||| ||||||||||| ||| |  ||||  |||| || |||||||||||||||||    
T  549057 tctcttttccctttctctttcttgtgagccgtcatcaaaatcctaattttttctccttcatccacta--gaggagtgatataaggtcaatttttgaccca 548960  T
Q  121 taatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtg 218  Q
     |||| ||||| ||||||| |||||| |||||| |||||||||||||  |||||| |||||||||| |       |||||||||||||||| |||| |||    
T  548959 aaatcacccctctaactcgtttttctttttcccttttattgaaataagcgattttcacatctattttg--tttttattttgtgatttcatcgtcttcgtg 548862  T
Q  219 caacattggtttgtttgtcgtctt 242  Q
    |||  |||||||||| ||||||||    
T  548861 caatgttggtttgttcgtcgtctt 548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 12576619 - 12576505
Alignment:
Q  74 tccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttcccttt-attgaaataaatgatt 171  Q
    |||||||| ||| |||||||  ||||||||||||||||||||||||  |||| ||||| ||||| | |||||||||||||||| |||||||||| |||||    
T  12576619 tccttcatccacgaaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaacttgtttttctatttccctttaattgaaataagtgatt 12576520  T
Q  172 tttacatctatttcg 186  Q
    || ||||||||||||    
T  12576519 ttcacatctatttcg 12576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 7049180 - 7049331
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  ||||||||||||||| |||||| ||||||||||| |||||||||||  |||||||||||||| ||||||| || |||| |||| |     
T  7049180 tttctctcttgtgagccgtcaccaaaaccataattttttctccttcatccaccaaagaggggtgatttagggtcaacttttgactcaaaatcacccc-tc 7049278  T
Q  134 aactc-gttttctatttccc-tttattgaaataaatgatttttacatctattt 184  Q
    | |||  |||||| |||||| ||||||||||||| ||||||| | ||||||||    
T  7049279 agctcatttttctctttcccttttattgaaataagtgattttcatatctattt 7049331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 19759783 - 19759934
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| |||| | || ||           
T  19759783 tgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatttgttacg-tttttt 19759881  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| ||||||| | || || ||||||||||  |||||||||||    
T  19759882 attttgtgatttcgtcatcttcgagcgacgttggtttgttcatcgtctttgtg 19759934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 4663973 - 4663847
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttc-cctttattg 159  Q
    |||||||| ||||||||||| |||||||||||  |||||  |||||||||||||||||| |||| ||||| |||| || |||| | |||| | ||||||     
T  4663973 cctaatttcttctccttcatccaccaaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaacacgtttttatgtttctcttttatta 4663874  T
Q  160 aaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||| ||| ||||||||    
T  4663873 aaataagtgattttcacaactatttcg 4663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 13234226 - 13234076
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||| | ||||  || | ||| ||| |||||| |||||| ||||||||||||| ||||||| |||||||||| |           
T  13234226 tgatttagggtcaatttttgacctaaaatc-accttctaattcgtttttctttttcccttttattgaaataagtgattttcacatctattttg-tttttt 13234129  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  13234128 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 13234076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 246
Target Start/End: Original strand, 32457598 - 32457792
Alignment:
Q  54 caccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcc 151  Q
    ||||||||||| | ||| |||||||||||  || |||||||  |||||||| |||||||||||||||| |||| ||| | ||||||||||| || ||||     
T  32457598 caccaaaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcacccatctaactcgtttttctctttca 32457697  T
Q  152 cttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
     ||| |||||||||| ||| ||| |||| ||||||        ||||||||||||| || |||| |||| || ||| |||||| ||||||||||||    
T  32457698 tttttattgaaataagtgactttcacatgtatttc-attttttattttgtgatttcgtcgtcttcgtgcgacgttgatttgttcgtcgtctttgtg 32457792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 15128344 - 15128189
Alignment:
Q  21 ctctcttttccctttttctctctt-gtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacc 118  Q
    ||||||||| ||||| | |||||| ||| | ||||||||||| || | ||| |||| |||||| || ||||||   |||||||||| |||||||||| ||    
T  15128344 ctctcttttacctttctttctcttcgtaagtcgtcaccaaaatcttagtttcttctacttcatccatcaaagatagatgatttagg-tcaatttttgtcc 15128246  T
Q  119 cataatcgcccctttaactcg-ttttctatttccctt-tattgaaataaatgatttt 173  Q
    || |||| ||||| ||||||| |||||| |||||||| ||||||||||| |||||||    
T  15128245 caaaatcacccctctaactcgtttttctctttcccttgtattgaaataagtgatttt 15128189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 33194600 - 33194690
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcc-ctttattgaaataaatgatttttacatctattt 184  Q
    ||||||||||||||||||||| ||| |||| |  || ||| ||||||| || ||||| |||||||||||||||| ||||| ||||||||||    
T  33194600 tgatttagggtcaatttttgatccaaaatcacatctctaattcgtttttctctttcctctttattgaaataaattattttcacatctattt 33194690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 891558 - 891675
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatg 168  Q
    ||||||||||| ||  ||||||   ||||| |||||| |||||||||||| |||  ||||| ||||||||||| || ||| | ||| |||||||||||||    
T  891558 ttctccttcatccattaaagagaggtgattaagggtcgatttttgacccaaaattacccctataactcgtttttctgttttcattttattgaaataaatg 891657  T
Q  169 atttttacatctatttcg 186  Q
    ||||| || |||||||||    
T  891658 attttcacgtctatttcg 891675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 5417218 - 5417166
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || ||||||||| || |||||||||| ||||||||||||    
T  5417218 attttgtgatttcgtcgtctttgtgcgacgttggtttgttcgtcgtctttgtg 5417166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 31747930 - 31748103
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttta-ttgaaataaatg 168  Q
    ||||| ||||| | ||||||||  |||||||||||||||||||||||| | |  |  |||| ||||||||||| || ||||| |||| ||||||||| |     
T  31747930 ttctcattcatccgccaaagagagatgatttagggtcaatttttgaccaaaagac--ccctctaactcgtttttctctttccttttaattgaaataagt- 31748026  T
Q  169 atttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    | ||| ||||||||||||       |||||||||||||  | |||| |||| |||||||||| |||||||||||||||    
T  31748027 actttcacatctatttcgtttttt-attttgtgatttcgacgtcttcgtgcgacattggtttctttgtcgtctttgtg 31748103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 32804289 - 32804376
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactc--gttttctatttccc-tttattgaaataaatgatttttacatct 180  Q
    ||||||||||||||||||||||||| |||| ||| | ||||||   |||||| || ||| ||||||||||||| ||||||| ||||||    
T  32804289 tgatttagggtcaatttttgacccaaaatcacccatctaactcattttttctcttacccttttattgaaataagtgattttcacatct 32804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 32574386 - 32574505
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  ||||||||||||| |||| ||| ||||||||||| ||||||| |    || ||||| |||||||||||||||| |||   |||| |    
T  32574386 tttctctcttgtgagccgtcaccaaaaccctattttcttctccttcatccaccaaatataggtgttttagagtcaatttttgacccaaaattaaccctct 32574485  T
Q  134 aactcg-ttttctatttccc 152  Q
    |||||| |||||| ||||||    
T  32574486 aactcgcttttctctttccc 32574505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 23843511 - 23843392
Alignment:
Q  128 ccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacatt 225  Q
    |||| ||||||||||| |||||||||||| ||| |||||| ||||||| |||||| || ||       ||||||||||||| || |||| |||| || ||    
T  23843511 ccctctaactcgtttttctatttcccttttattaaaataagtgattttcacatcttttacgtttttt-attttgtgatttcgtcgtcttcgtgcgacgtt 23843413  T
Q  226 ggtttgtttgtcgtctttgtg 246  Q
    |||||||| ||||||||||||    
T  23843412 ggtttgttcgtcgtctttgtg 23843392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 10744553 - 10744665
Alignment:
Q  75 ccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttcta-tttccctttattgaaataaatgatt 171  Q
    ||||||| ||||||||| |  |||||||||||||| |||||||||| |||| | ||| ||||| |  ||||||| ||||  ||||||||||||| || ||    
T  10744553 ccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctctaacttgttttttctattttctttttattgaaataagtggtt 10744652  T
Q  172 tttacatctattt 184  Q
    |  ||||||||||    
T  10744653 tacacatctattt 10744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 8644240 - 8644332
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||||||||||||||| | |||| || ||  || ||  |||||| |||||| ||||||||||||| || |||| ||||||||||||    
T  8644240 tgatttagggtcaatttttgaccaaaaatcaccactcaaattcatttttctctttcccttttattgaaataagtgtttttcacatctatttcg 8644332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 15128173 - 15128121
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  15128173 attttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtg 15128121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 32257902 - 32258001
Alignment:
Q  20 cctctcttttccctttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacc 118  Q
    ||||||| ||||| || ||||||||||  | |||||| |||| |||| ||| ||||| ||||| || |||||||| ||||| || |||||||||||||||    
T  32257902 cctctctcttcccattctctctcttgtgagtcgtcactaaaatcctagtttcttctc-ttcatccatcaaagagggatgatgtaaggtcaatttttgacc 32258000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 33703671 - 33703536
Alignment:
Q  53 tcaccaaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta-actcgttttctatttcc 151  Q
    ||||||||||||| ||| ||||||||||| ||| ||||||| |||||||| ||||||||||| ||||| |||| |||| | | |||||||||||||||||    
T  33703671 tcaccaaaacctagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcaccccctcacactcgttttctatttcc 33703572  T
Q  152 c-tttattgaaataaatgatttttacatctatttcg 186  Q
    | ||||||||||||| ||||||| ||||||||||||    
T  33703571 cttttattgaaataagtgattttcacatctatttcg 33703536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 22345092 - 22344880
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  ||||||||||||||| || ||| ||||||||||| || ||||||||  ||||||||| ||||||||||||||| |||| ||||| ||    
T  22345092 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctcta 22344993  T
Q  135 actcgtttt--ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| |||||  || || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||    
T  22344992 acttgtttttccttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcgtcgtcttcgtgcgacgttggtttgt 22344894  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  22344893 tcgtcgtctttgtg 22344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 44514184 - 44514030
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||| || ||| ||||| | ||||||||||||||| |||||| ||| ||||||| ||| |||||||  |||||||||||||||||||||||||    
T  44514184 tctcttttccccttctctttcttggaagccgtcaccaaaaccctaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgaccca 44514085  T
Q  121 taatcgcccctttaactcg--ttttctatttccc-tttattgaaataaatgattt 172  Q
     |||| || |||||||| |  ||||||||||||| ||||||||||||| ||||||    
T  44514084 aaatcacctctttaacttgttttttctatttcccttttattgaaataagtgattt 44514030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 44562868 - 44562717
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| |||||| || ||           
T  44562868 tgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatctgttacg-ttttat 44562770  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| ||||||| |||| || |||||||||| ||||||||||||    
T  44562769 attttgtgatttcgtcatcttcgtgcgacgttggtttgttcgtcgtctttgtg 44562717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 630904 - 630752
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||  |||| ||| | ||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||           
T  630904 tgatttagggtcaatttttgaccctaaatcacccatctaactcgtttttctatttcccttttattgaaataagtgattttcacatctatttcgttttttt 630805  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || ||||  ||| || |||||||||| ||||||||||||    
T  630804 attttgtgatttcgtcgtcttcttgcgacgttggtttgttcgtcgtctttgtg 630752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 5832228 - 5832380
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||||||  |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||           
T  5832228 tgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatctatttcgttttttt 5832327  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || ||||  ||| || |||||||||| ||||| ||||||    
T  5832328 attttgtgatttcgtcgtcttcttgcgacgttggtttgttcgtcgtatttgtg 5832380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 14717434 - 14717272
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  |||||||||||||| ||| ||| ||||||||||| |||||||||||  ||||||||||||||||||||||  |    
T  14717434 tctcttttcccttt--ctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgactta 14717337  T
Q  121 taatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctattt 184  Q
     |||   |||| ||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||    
T  14717336 -aattcaccctctaactcgtttttctttttcccttttattgaaataagtgattttcacatctattt 14717272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 30853964 - 30853811
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatc-gcccctt 132  Q
    |||||||||| |  ||| ||||||||||| || ||| ||||||||||| |||||||||||| ||||| | ||||||||||||||||| ||||  ||||      
T  30853964 tttctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcacccccac 30853865  T
Q  133 taactc-gttttctatttcccttt-attgaaataaatgatttttacatctattt 184  Q
    ||| ||  |||||| ||||||||| |||||||||||||||||| ||||||||||    
T  30853864 taagtcatttttctctttccctttcattgaaataaatgattttcacatctattt 30853811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 246
Target Start/End: Original strand, 38646546 - 38646730
Alignment:
Q  63 ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttct-atttccctttattga 160  Q
    ||||||| |||||||||||  | ||||||||  ||||||| ||||||||||||||||| |||| ||| | ||||||| ||||||  ||| | ||||||||    
T  38646546 ctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcacccatgtaactcgtttttctctttttcttttattga 38646645  T
Q  161 aataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| ||||||| |||||||||||        ||||||||||||  || |||| |||| || |||||||||| ||||||||||||    
T  38646646 aataagtgattttaacatctatttc-attttttattttgtgattttgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 38646730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 37685275 - 37685122
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  |||||||| |||| |||| ||| || |||||||| ||||||||||| | |||| || |||||||||||||||| ||||   ||| ||    
T  37685275 ttctctcttgtgagccgtcacaaaaatcctagtttctt-tccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaatcaatcctcta 37685177  T
Q  135 actcgttttctatttcc---ctttattgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||||||    ||||||||||||| ||||||| ||| || |||||    
T  37685176 actcgttttctatttcctttttttattgaaataagtgattttcacacctgtttcg 37685122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 37700243 - 37700396
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||||||  |||||||| |||| |||| ||| || |||||||| ||||||||||| | |||| || |||||||||||||||| ||||   ||| ||    
T  37700243 ttctctcttgtgagccgtcacaaaaatcctagtttctt-tccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaatcaatcctcta 37700341  T
Q  135 actcgttttctatttcc---ctttattgaaataaatgatttttacatctatttcg 186  Q
    |||||||||||||||||    ||||||||||||| ||||||| ||| || |||||    
T  37700342 actcgttttctatttcctttttttattgaaataagtgattttcacacctgtttcg 37700396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 6213039 - 6212917
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ctatttccctttattg 159  Q
    |||| ||| ||||||||| | || ||||||||  ||||||| ||||||||||||||||| |||| | ||| |||||||||||  || || || |||||||    
T  6213039 cctagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcacacctctaactcgtttttccttttcccttttattg 6212940  T
Q  160 aaataaatgatttttacatctat 182  Q
    |||||| ||||||| ||||||||    
T  6212939 aaataagtgattttcacatctat 6212917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 22032229 - 22032123
Alignment:
Q  76 cttcattcaccaaagaggtatgatttagggtcaatttttgaccc-ataatcgcccctttaactcgttttct-atttccctttattgaaataaatgatttt 173  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| | |||| ||||| ||| | |||||||  ||||| ||||||||||||| || ||||    
T  22032229 cttcatccaccaaagagggatgatttagggtcaatttttgacccaaaaatcacccctctaaattgttttctcttttccttttattgaaataagtgttttt 22032130  T
Q  174 tacatct 180  Q
     ||||||    
T  22032129 cacatct 22032123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 8893294 - 8893380
Alignment:
Q  102 agggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||| ||||||||||||| |||| ||| | ||||||||||| || ||||||||| |||||||||| ||||||| ||||||||||||    
T  8893294 agggttaatttttgacccaaaatcacccttctaactcgtttttctctttcccttttattgaaataagtgattttcacatctatttcg 8893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 21326468 - 21326554
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatct 180  Q
    ||||||||| ||||||||||| | | |||| ||||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||||||    
T  21326468 tgatttaggatcaatttttgaacaaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgattttcacatct 21326554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 23320448 - 23320586
Alignment:
Q  109 atttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttc 206  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||| ||||||||||||| | ||||| |||||| || ||       |||||||||||||    
T  23320448 atttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtcattttcacatctgttacg-ttttttattttgtgatttc 23320546  T
Q  207 atcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
     || |||| |||  || |||||||||| ||||||||||||    
T  23320547 gtcgtcttcgtgtgacgttggtttgttcgtcgtctttgtg 23320586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 26199567 - 26199677
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaattt----ttgacccataatcgcccctttaactcgttttctatttccctttattgaaataaa 166  Q
    ||||||||||| |||||||||||  ||| | |||||||||||    |||||||| |||| |||||||||      ||||||||||||||||||||||||     
T  26199567 ttctccttcatccaccaaagaggggtgaat-agggtcaatttaattttgacccaaaatcacccctttaa------ttctatttccctttattgaaataag 26199659  T
Q  167 tgatttttacatctattt 184  Q
    ||||||| ||||||||||    
T  26199660 tgattttcacatctattt 26199677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 46589109 - 46589256
Alignment:
Q  38 ctctcttgtatgccgtcaccaaaa-cctaattta-ttctccttcattc--accaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    |||||||||  ||||||||||||| ||||||||  ||||||||||| |  ||||||||||  ||||||| | |||||||||||| || ||||  |||| |    
T  46589109 ctctcttgtgagccgtcaccaaaaacctaattttcttctccttcatccccaccaaagaggggtgatttatgatcaatttttgactcaaaatc-accctct 46589207  T
Q  134 aactcgttttctatttc-cctttattgaaataaatgatttttacatcta 181  Q
    |||||||||| |||||| | |||||| |||||| ||||||| |||||||    
T  46589208 aactcgttttatatttctcttttattaaaataagtgattttcacatcta 46589256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 15276625 - 15276558
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaa 88  Q
    |||||||||||||| ||||| ||||  ||||||||||||||| || ||||||||||||||| ||||||    
T  15276625 tctcttttccctttctctcttttgtgagccgtcaccaaaaccatagtttattctccttcatccaccaa 15276558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 45659041 - 45659128
Alignment:
Q  100 ttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttc 185  Q
    ||||||||||||||||||||| |||| |  || ||||||||||| || ||| ||||| |||||||||| ||||||| |||||||||||    
T  45659041 ttagggtcaatttttgacccaaaatcactgctctaactcgtttttctctttaccttttattgaaataagtgattttcacatctatttc 45659128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 17579744 - 17579842
Alignment:
Q  77 ttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctatttcccttt-attgaaataaatgatttt 173  Q
    |||||||| ||||||||  ||| ||||||||||||||||| ||| ||||  |||| ||||||  |||||| ||||||||| |||||||||| |||||||    
T  17579744 ttcattcatcaaagaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactcatttttctctttccctttaattgaaataagtgatttt 17579842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 35078033 - 35077917
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatg 168  Q
    |||||| |||||||| ||||||  |||||||| | |||| |||||||||| |||| || || ||||||||||| || ||||  ||| |||||||||| ||    
T  35078033 ttctccctcattcac-aaagagagatgatttatgatcaaattttgacccaaaatcacctctctaactcgtttttctctttcatttttattgaaataagtg 35077935  T
Q  169 atttttacatctatttcg 186  Q
    ||||| ||||||||||||    
T  35077934 attttcacatctatttcg 35077917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 38644817 - 38644765
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| ||||||||||||| ||||||||||||    
T  38644817 attttgtgatttcttcgtcttcgtgcgacattggtttgttcgtcgtctttgtg 38644765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 52839409 - 52839465
Alignment:
Q  87 aaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||||||  ||||||||||||||||||||||||| |||| ||| | |||||||||||    
T  52839409 aaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactcgtttt 52839465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 1768006 - 1768053
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  1768006 ttttctctttcccttttattgaaataaatgattttcacatctatttcg 1768053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 900134 - 900244
Alignment:
Q  113 ttgacccataatcgcccctttaactcgttttctatttcccttt--attgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatca 210  Q
    |||||||  |||| ||||| |||||| |||| | |||||||||  |||||||||| ||||||| ||||||||||||       ||||||||||||| ||     
T  900134 ttgaccctaaatcacccctgtaactcattttttctttccctttttattgaaataagtgattttcacatctatttcg-ttttttattttgtgatttcgtcg 900232  T
Q  211 tctttgtgcaac 222  Q
    ||||||||||||    
T  900233 tctttgtgcaac 900244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 49651840 - 49651922
Alignment:
Q  106 tcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||| ||| |||| | | | ||||||||||| |||||||| ||| |||||||||||||| ||| ||||||||||||    
T  49651840 tcaatttttgatccaaaatcacacatctaactcgtttttctatttcctttttattgaaataaatgaatttcacatctatttcg 49651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 23257185 - 23257234
Alignment:
Q  197 ttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| |||| |||| || |||||||||| ||||||||||||    
T  23257185 ttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 23257234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 13691874 - 13691830
Alignment:
Q  99 tttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||||||||||||||||||||| |||| ||||| ||| |||||||    
T  13691874 tttagggtcaatttttgacccaaaatcacccctctaaatcgtttt 13691830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 33486752 - 33486537
Alignment:
Q  34 ttttctctcttgtatgccgtcaccaaaacct-aatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctt 132  Q
    ||||||||||||   |||||||||||||||| ||||| ||| ||||||| ||| |||||||  ||||||||||||||||||||||||| |||| ||| |     
T  33486752 ttttctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacccatc 33486653  T
Q  133 taactcg--ttttctatttccc-tttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtt 229  Q
    ||||| |  ||||||||||||| ||||||||||||| ||||||  ||||||||||||        |||||||||||| || |||| |||| || ||| ||    
T  33486652 taacttgttttttctatttcccttttattgaaataagtgatttacacatctatttcgtttcttt-ttttgtgatttcgtcgtcttagtgcgaccttgttt 33486554  T
Q  230 tgtttgtcgtctttgtg 246  Q
    |||| ||||||||||||    
T  33486553 tgttcgtcgtctttgtg 33486537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 6887345 - 6887146
Alignment:
Q  49 gccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt--ct 145  Q
    |||||||||||||| ||| ||| ||||||||||| || ||||||||  ||||||||||||||||||| ||||| |||| ||||| ||||| |||||  ||    
T  6887345 gccgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaacttgtttttcct 6887246  T
Q  146 atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgt 245  Q
     || || ||||||||||||| ||||||| |||||||||| |        |||||||||||| || |||| |||| || |||||||||| |||||||||||    
T  6887245 tttcccttttattgaaataagtgattttcacatctattttgttttttc-ttttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 6887147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 31645763 - 31645975
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    |||||||| ||  ||||||||||||||| || ||| ||||||||||| ||  |||||||  ||||||||||||||||||||| ||| |||| ||||| ||    
T  31645763 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctcta 31645862  T
Q  135 actcgtttt--ctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgt 232  Q
    ||| |||||  || || || ||||||||||||| ||||||| |||||||||| |       ||||||||||||| || |||| |||| || |||||||||    
T  31645863 acttgtttttccttttcccttttattgaaataagtgattttcacatctattttg-ttttttattttgtgatttcttcgtcttcgtgcgacgttggtttgt 31645961  T
Q  233 ttgtcgtctttgtg 246  Q
    | ||||||||||||    
T  31645962 tcgtcgtctttgtg 31645975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 41554436 - 41554574
Alignment:
Q  52 gtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttctatt 148  Q
    |||||||||| |||||||| ||| |||||||||| ||||||||  ||||||||| ||||||||||| ||| |||| ||||| ||||| |  |||||||||    
T  41554436 gtcaccaaaatcctaatttcttcaccttcattcatcaaagaggggtgatttaggatcaatttttgatccaaaatcacccctctaacttgttttttctatt 41554535  T
Q  149 tccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||| ||||||||||||| ||||||  ||||||||||||    
T  41554536 tcccttttattgaaataagtgatttacacatctatttcg 41554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 18472902 - 18472753
Alignment:
Q  36 ttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttta 134  Q
    ||||||||||   |||||||||||||| ||| ||| ||| ||||||| |||||||||||   |||||||||||||||||||||||| |||| ||||| ||    
T  18472902 ttctctcttgggagccgtcaccaaaactctagtttcttcaccttcatccaccaaagagg---gatttagggtcaatttttgacccaaaatcacccctcta 18472806  T
Q  135 actcg--ttttcta-tttccctttattgaaataaatgatttttacatctattt 184  Q
    ||| |  ||||||| ||||| ||||||| ||||| ||||||  ||||||||||    
T  18472805 acttgttttttctattttccttttattgcaataagtgatttacacatctattt 18472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 19646185 - 19646009
Alignment:
Q  71 ttctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttctatttccc-tttattgaaataaatg 168  Q
    |||||||||||  ||||||||||  || |||| ||||||| ||||||||| |||| ||||| ||||||  |||||| |||||| |||| |||||||| ||    
T  19646185 ttctccttcatcgaccaaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactcatttttctctttcccttttaatgaaataagtg 19646086  T
Q  169 atttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||| ||||||||||||       |||||||||||| ||| |||||||||  | |  ||||||||||||||||||||    
T  19646085 attttcacatctatttcg-ttttttattttgtgattttatcgtctttgtgcggcgtcagtttgtttgtcgtctttgtg 19646009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 41063576 - 41063423
Alignment:
Q  34 ttttctctcttgtatgccgtcaccaaaa-cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctt 132  Q
    |||||| ||||||  ||||||||||||| |||||||| ||||||||||| || ||||||||  ||||  |||||||||||||||| || |||| | | |     
T  41063576 ttttctatcttgtcagccgtcaccaaaatcctaatttcttctccttcatccatcaaagaggg-tgatc-agggtcaatttttgactcaaaatcactcatc 41063479  T
Q  133 taactcgtttt-ctatttcccttt-attgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||| || ||||| ||| |||||||||||||||||| ||||||||||||    
T  41063478 taactcgtttttctctttccattttattgaaataaatgattttcacatctatttcg 41063423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 28618565 - 28618677
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||| ||| |||||||||||   |||||||||  ||||||| ||||||||||| ||||| |||| ||||| ||||||| ||||||||||||| |||||||    
T  28618565 cctagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcacccctctaactcgtttttctatttcccttttattg 28618664  T
Q  160 aaataaatgattt 172  Q
    |||||| ||||||    
T  28618665 aaataagtgattt 28618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 2415333 - 2415474
Alignment:
Q  35 tttctctcttgtatgccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgccccttt 133  Q
    ||||||||||||  ||||||| ||||||| || |||| | |||||||| || ||||||    ||||||||||||||||||||||||| |||| ||| | |    
T  2415333 tttctctcttgtgagccgtcatcaaaaccctagtttaatttccttcatccatcaaagataggtgatttagggtcaatttttgacccaaaatcacccttct 2415432  T
Q  134 aactcg-ttttctatttccc-tttattgaaataaatgatttt 173  Q
    |||| | |||||| |||||| ||||||||||||| |||||||    
T  2415433 aacttgtttttctttttcccttttattgaaataagtgatttt 2415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 29310468 - 29310322
Alignment:
Q  96 tgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttctatttccctttattgaaataaatgatttttacatctatttcgnnnnnnn 193  Q
    ||||||||||||||||||||| ||| |||| ||||| ||||| |  |||||| || || ||||||||||||| ||||||| |||||| |||             
T  29310468 tgatttagggtcaatttttgatccaaaatcacccctctaacttgttttttcttttcccttttattgaaataagtgattttcacatctgttt------ttt 29310375  T
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  29310374 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 29310322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 34894069 - 34893988
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt 143  Q
    |||| ||| ||||||||||| || ||||||||  ||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  34894069 cctagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctctaactcgtttt 34893988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 4070530 - 4070641
Alignment:
Q  76 cttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttt 173  Q
    |||||| ||||||| |||  ||||||||||||| ||||||||||| |||| ||||| | ||||||||| |||||||| ||| |||||||||| |||||||    
T  4070530 cttcatccaccaaaaaggggtgatttagggtca-tttttgacccaaaatcacccctctgactcgtttttctatttcctttttattgaaataagtgatttt 4070628  T
Q  174 tacatctatttcg 186  Q
     |||| |||||||    
T  4070629 cacatttatttcg 4070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 4727045 - 4726961
Alignment:
Q  98 atttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttttacatct 180  Q
    ||||||||||||||||||||||| ||||  || | ||||||| ||||||||||||| ||||||||||||| ||||||| ||||||    
T  4727045 atttagggtcaatttttgacccaaaatcatccatataactcgtttttctatttcccttttattgaaataagtgattttcacatct 4726961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 37424966 - 37425079
Alignment:
Q  74 tccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgttt----tctatttccc-tttattgaaataaatg 168  Q
    |||||||| |||||||||||  ||||||| ||||||||| ||||||| |||| | ||| ||||||||||    | |||||||| ||||||||||||| ||    
T  37424966 tccttcatccaccaaagaggggtgatttatggtcaatttctgacccaaaatcacgcctctaactcgttttatatatatttcccttttattgaaataagtg 37425065  T
Q  169 atttttacatctat 182  Q
    ||||| ||||||||    
T  37425066 attttcacatctat 37425079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 41358033 - 41358125
Alignment:
Q  96 tgatttagggtcaatttttgacccataatc-gcccctttaactcg-ttttct-atttccctttattgaaataaatgatttttacatctatttc 185  Q
    ||||||||||||||||||||||||| ||||  ||||| ||||||| ||||||  ||||| ||||||||||||| | ||||| |||||||||||    
T  41358033 tgatttagggtcaatttttgacccaaaatcaccccctctaactcgtttttctcttttccttttattgaaataagttattttcacatctatttc 41358125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 6648066 - 6647952
Alignment:
Q  62 cctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattg 159  Q
    |||| |||||| |||||||| || ||||||||   |||||| |||||| |||||||||| |||| | ||| ||||||| |||||  |||||| |||||||    
T  6648066 cctagtttattttccttcatccatcaaagaggggcgatttatggtcaaattttgacccaaaatcactcctctaactcgtttttcgctttcccttttattg 6647967  T
Q  160 aaataaatgattttt 174  Q
    |||||| ||||||||    
T  6647966 aaataagtgattttt 6647952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 10924188 - 10924101
Alignment:
Q  158 tgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||||| ||||||||||||||||||||       ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  10924188 tgaaataagtgatttttacatctatttcgtttttt-attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 10924101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 15710513 - 15710629
Alignment:
Q  74 tccttcattcaccaaagaggtatgatttagggtcaatttttg--acccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatga 169  Q
    |||||||| || |||||| |  ||||||| |||||||||||   | ||| |||| ||||| ||||||||||| || ||||||||| |||||||||| |||    
T  15710513 tccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcacccctctaactcgtttttctctttcccttttattgaaataagtga 15710612  T
Q  170 tttttacatctatttcg 186  Q
    |||| ||||||||||||    
T  15710613 ttttcacatctatttcg 15710629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 41988169 - 41988258
Alignment:
Q  86 caaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttccc-tttattgaaataaatgatttt 173  Q
    ||||||||  ||||||||| |||||||||||  || |||||||||| ||||||| |||||| |||||| ||| ||||||||| |||||||    
T  41988169 caaagaggggtgatttaggatcaatttttgattcaaaatcgcccctctaactcgtttttctctttcccttttgttgaaataagtgatttt 41988258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 8812291 - 8812178
Alignment:
Q  76 cttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcg--ttttctatttcc-ctttattgaaataaatgattt 172  Q
    |||||| ||||||| |||  |||| |||||||||||||| ||||| |||| ||||| ||||  |  ||||||||||||  ||||||||| ||| ||||||    
T  8812291 cttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcacccctctaacatgttttttctatttcctttttattgaagtaagtgattt 8812192  T
Q  173 ttacatctatttcg 186  Q
    | | ||||||||||    
T  8812191 tcatatctatttcg 8812178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 14910738 - 14910693
Alignment:
Q  140 ttttctatttcccttt-attgaaataaatgatttttacatctattt 184  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  14910738 ttttctatttcccttttattgaaataagtgattttcacatctattt 14910693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 28423863 - 28423830
Alignment:
Q  153 tttattgaaataaatgatttttacatctatttcg 186  Q
    ||||||||||||||||||||||| ||||||||||    
T  28423863 tttattgaaataaatgatttttatatctatttcg 28423830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 5378396 - 5378448
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| | ||||||||||| ||||||||||||    
T  5378396 attttgtgatttcgtcgtcttcgtgcgaaattggtttgttcgtcgtctttgtg 5378448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 6074752 - 6074704
Alignment:
Q  198 tgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||| || |||| |||||||| || |||||||||||||||||||    
T  6074752 tgtgatttcgtcgtcttagtgcaacactgttttgtttgtcgtctttgtg 6074704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 9034962 - 9034910
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    |||||||||||||||| |||| |||| || ||||||||||  |||||||||||    
T  9034962 attttgtgatttcatcgtcttcgtgcgacgttggtttgttcctcgtctttgtg 9034910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 34843860 - 34843927
Alignment:
Q  49 gccgtcaccaaaacctaa--tttattctccttcattcaccaaagaggtatgatttagggtcaattttt 114  Q
    |||||||||||||||| |  ||| |||||||||||  |||||||||| ||||||||  ||||||||||    
T  34843860 gccgtcaccaaaaccttagttttcttctccttcatcgaccaaagagggatgatttatagtcaattttt 34843927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 5643 - 5494
Alignment:
Q  98 atttagggtcaatttttgacccataatcgcccctttaactcg-ttttctatttc-cctttattgaaataaatgatttttacatctatttcgnnnnnnnat 195  Q
    |||||||||||||||||||| || ||| |||||||||||||| ||||||||||| | ||||||||||||| ||||||| |||||| ||  |       ||    
T  5643 atttagggtcaatttttgactcaaaattgcccctttaactcgtttttctatttctcttttattgaaataagtgattttcacatctgttatg-ttttttat 5545  T
Q  196 tttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  5544 tttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 5494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 244566 - 244782
Alignment:
Q  34 ttttctctcttgtatgccgtcaccaaaacctaa-tttattctccttcattcaccaaagaggtatgatttagggtcaa--tttttgacccataatcgcccc 130  Q
    |||||||||||||  |||||||||||||||||| ||| |||| |||||| ||| |||||||  ||||||||||||||  ||||| |||   |||| ||||    
T  244566 ttttctctcttgtgagccgtcaccaaaacctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaattttttttaccataaatcacccc 244665  T
Q  131 tttaactcg-ttttct-atttccctttattgaaataaatgatttttacatctatttcgnnnnnnnattttgtgatttcatcatctttgtgcaacattggt 228  Q
    | ||||||| ||||||  ||||  ||||||||||||| ||||||| ||||||||||||       | ||||||||||  || |||| |||| || |||||    
T  244666 tctaactcgtttttctcttttctttttattgaaataagtgattttcacatctatttcg-ttttttagtttgtgattttgtcgtcttcgtgcgaccttggt 244764  T
Q  229 ttgtttgtcgtctttgtg 246  Q
    ||||| ||||||||||||    
T  244765 ttgttcgtcgtctttgtg 244782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 11910 - 11804
Alignment:
Q  82 tcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-ctatttcccttt-attgaaataaatgatttttacatc 179  Q
    ||||||||||   ||||||||| |||||||||||||||| |||| | | | ||||||||||| |||||||||||| |||||||||| ||||||| |||||    
T  11910 tcaccaaagatagatgatttagtgtcaatttttgacccaaaatcactcatctaactcgtttttctatttcccttttattgaaataagtgattttcacatc 11811  T
Q  180 tatttcg 186  Q
    |||||||    
T  11810 tatttcg 11804  T

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Target: scaffold0316 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 12318 - 12171
Alignment:
Q  100 ttagggtcaatttttgacccataatcgcccctttaactcgtt-ttctatttcccttt-attgaaataaatgatttttacatctatttcgnnnnnnnattt 197  Q
    ||||||||||||||||||||| ||||  | || || |||||| |||| ||||||||| |||||||||| ||||||| ||| ||||||||       ||||    
T  12318 ttagggtcaatttttgacccaaaatcatctctctagctcgttcttctctttcccttttattgaaataagtgattttcacacctatttcg-ttttttattt 12220  T
Q  198 tgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  12219 tgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 12171  T

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Target: scaffold1294 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 727 - 867
Alignment:
Q  49 gccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactcgtttt-cta 146  Q
    ||||||| |||||| ||| ||| ||||||||||| ||||||| || | ||||||| ||||||||||||||| | ||||  | || ||||||||||| ||     
T  727 gccgtcatcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatcatcactctaactcgttttcctc 826  T
Q  147 tttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
    |||||| ||||||||||||| ||  ||| ||||||||||||    
T  827 tttcccttttattgaaataagtggctttcacatctatttcg 867  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 10966 - 11103
Alignment:
Q  49 gccgtcaccaaaacc-taatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc-gttttcta 146  Q
    ||||||||||||||| || ||| |||||  |||| ||||||||| |  |||||| |||||||||||||||  | |||| ||||| ||||||  ||||||     
T  10966 gccgtcaccaaaaccctagtttcttctctatcatacaccaaagatgggtgattttgggtcaatttttgacttaaaatcacccctctaactcatttttctt 11065  T
Q  147 tttccct-ttattgaaataaatgatttttacatctatt 183  Q
    ||||||| |||||||||||| ||||||| ||| |||||    
T  11066 tttccctcttattgaaataagtgattttcacagctatt 11103  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 137235 - 137085
Alignment:
Q  39 tctcttgtatgccgtcaccaaaacctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgacccataatcgcccctttaactc 138  Q
    ||||||| | ||||||||||||||||| ||| ||| | |||||||||||||||||  |||||| || |   ||||  | ||| |||  ||| | ||||||    
T  137235 tctcttgaaagccgtcaccaaaacctagtttcttcactttcattcaccaaagaggggtgatttgggtttttttttatatccaaaataacccttctaactc 137136  T
Q  139 --gttttctatttccc-tttattgaaataaatgatttttacatctatttcg 186  Q
       ||||||||||||| |||| |||||||| ||||||| ||||||||||||    
T  137135 attttttctatttcccttttaatgaaataagtgattttaacatctatttcg 137085  T

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Target: scaffold0665 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 1283 - 1182
Alignment:
Q  22 tctcttttccctttttctctcttgtatgccgtcaccaaaac-ctaatttattctccttcattcaccaaagaggtatgatttagggtcaatttttgaccca 120  Q
    ||||||||||||||  |||||||||  ||||||||| |||| ||| ||  ||||| ||||| ||||||||| |  ||||||||| |||||||||||||||    
T  1283 tctcttttcccttt--ctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgaccca 1187  T
Q  121 taatc 125  Q
     ||||    
T  1186 aaatc 1182  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 36623 - 36675
Alignment:
Q  194 attttgtgatttcatcatctttgtgcaacattggtttgtttgtcgtctttgtg 246  Q
    ||||||||||||| || |||| |||| || |||||||||| ||||||||||||    
T  36623 attttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtg 36675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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