View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20158_low_18 (Length: 258)

Name: NF20158_low_18
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20158_low_18
NF20158_low_18
[»] chr7 (26 HSPs)
chr7 (13-73)||(14792059-14792119)
chr7 (121-172)||(14791961-14792012)
chr7 (13-74)||(48935332-48935393)
chr7 (14-66)||(28235383-28235435)
chr7 (19-66)||(21442724-21442771)
chr7 (13-74)||(3370546-3370607)
chr7 (13-74)||(46349825-46349886)
chr7 (19-66)||(596061-596108)
chr7 (19-74)||(31031835-31031890)
chr7 (19-66)||(33979719-33979766)
chr7 (19-74)||(33982256-33982311)
chr7 (19-66)||(35669632-35669679)
chr7 (27-74)||(42833664-42833711)
chr7 (121-163)||(21442627-21442669)
chr7 (28-74)||(41406300-41406346)
chr7 (13-74)||(27826806-27826867)
chr7 (13-74)||(29994157-29994218)
chr7 (13-74)||(42328964-42329025)
chr7 (13-74)||(46350777-46350838)
chr7 (13-74)||(46536219-46536280)
chr7 (13-70)||(46672603-46672660)
chr7 (13-74)||(47479883-47479944)
chr7 (13-73)||(4060449-4060509)
chr7 (19-70)||(38224728-38224780)
chr7 (14-74)||(42328105-42328165)
chr7 (13-69)||(47869338-47869394)
[»] chr5 (17 HSPs)
chr5 (13-66)||(17540358-17540411)
chr5 (121-172)||(17540463-17540514)
chr5 (13-73)||(35766656-35766716)
chr5 (13-64)||(24463614-24463665)
chr5 (121-163)||(5049996-5050038)
chr5 (13-74)||(25881604-25881665)
chr5 (19-66)||(7157447-7157494)
chr5 (19-74)||(15524467-15524522)
chr5 (13-74)||(6789555-6789616)
chr5 (13-74)||(10815160-10815221)
chr5 (40-69)||(12049574-12049603)
chr5 (13-74)||(15498742-15498803)
chr5 (13-66)||(24171462-24171515)
chr5 (13-74)||(29525262-29525323)
chr5 (13-74)||(36761159-36761220)
chr5 (13-74)||(37530686-37530747)
chr5 (13-74)||(42709408-42709469)
[»] chr8 (10 HSPs)
chr8 (13-66)||(53420-53473)
chr8 (13-74)||(38746898-38746959)
chr8 (20-74)||(29725875-29725929)
chr8 (19-74)||(43129694-43129749)
chr8 (19-73)||(3512574-3512628)
chr8 (13-74)||(14911862-14911923)
chr8 (13-74)||(17121912-17121973)
chr8 (13-74)||(25100343-25100404)
chr8 (13-74)||(40529598-40529659)
chr8 (13-74)||(43800710-43800771)
[»] chr4 (16 HSPs)
chr4 (19-73)||(49646126-49646180)
chr4 (19-66)||(19870063-19870110)
chr4 (20-74)||(31624339-31624393)
chr4 (13-63)||(51941200-51941250)
chr4 (13-66)||(25687083-25687136)
chr4 (19-66)||(7141092-7141139)
chr4 (19-74)||(10656271-10656326)
chr4 (19-74)||(10870416-10870471)
chr4 (19-74)||(43940062-43940117)
chr4 (19-66)||(49648789-49648836)
chr4 (19-66)||(50792365-50792412)
chr4 (19-66)||(55495138-55495185)
chr4 (13-74)||(6287934-6287995)
chr4 (13-74)||(19801804-19801865)
chr4 (13-74)||(37114375-37114436)
chr4 (13-74)||(49335132-49335193)
[»] chr1 (11 HSPs)
chr1 (13-74)||(38624165-38624226)
chr1 (17-69)||(50940144-50940196)
chr1 (19-74)||(44299885-44299940)
chr1 (13-74)||(27747704-27747765)
chr1 (13-74)||(28314795-28314856)
chr1 (13-74)||(11823681-11823742)
chr1 (13-74)||(41865384-41865445)
chr1 (13-66)||(46742553-46742606)
chr1 (13-74)||(47326525-47326586)
chr1 (13-74)||(50586120-50586181)
chr1 (13-69)||(48817219-48817275)
[»] chr2 (13 HSPs)
chr2 (14-66)||(43496260-43496312)
chr2 (19-68)||(33179064-33179113)
chr2 (19-66)||(44525936-44525983)
chr2 (13-74)||(1875974-1876035)
chr2 (13-74)||(5774190-5774251)
chr2 (13-74)||(7454629-7454690)
chr2 (13-74)||(8875770-8875831)
chr2 (13-74)||(12160855-12160916)
chr2 (13-74)||(14958217-14958278)
chr2 (17-74)||(24520177-24520234)
chr2 (13-66)||(34245343-34245396)
chr2 (13-74)||(39241102-39241163)
chr2 (13-74)||(43568460-43568521)
[»] chr3 (15 HSPs)
chr3 (19-66)||(2229118-2229165)
chr3 (19-66)||(12122123-12122170)
chr3 (19-66)||(43359251-43359298)
chr3 (13-74)||(17666899-17666960)
chr3 (13-66)||(30317893-30317946)
chr3 (19-66)||(22978181-22978228)
chr3 (19-66)||(25999119-25999166)
chr3 (19-74)||(41888911-41888966)
chr3 (19-66)||(48072079-48072126)
chr3 (19-66)||(50938184-50938231)
chr3 (13-59)||(43968308-43968354)
chr3 (13-74)||(34435916-34435977)
chr3 (13-74)||(41991625-41991686)
chr3 (13-66)||(52959388-52959441)
chr3 (13-74)||(54463397-54463458)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-66)||(94353-94400)
[»] chr6 (6 HSPs)
chr6 (28-70)||(15508461-15508503)
chr6 (40-74)||(34574537-34574571)
chr6 (13-66)||(6833996-6834048)
chr6 (13-74)||(12130578-12130639)
chr6 (13-74)||(24119180-24119241)
chr6 (14-74)||(20645756-20645816)


Alignment Details
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 14792119 - 14792059
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggta 73  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14792119 catgagcttatagctttttgtgagaagctatttcaagtagcttttgaacttatagctggta 14792059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 14792012 - 14791961
Alignment:
Q  121 aaaaataaattgcccactaaatagaccttaactgcccacgttctattattca 172  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14792012 aaaaataaattgcccactaaataggccttaactgcccacgttctattattca 14791961  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 48935332 - 48935393
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  48935332 catgagcttatagctttttgtgagaagctattttaagtagcttttgagcttatagctggtag 48935393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 28235383 - 28235435
Alignment:
Q  14 atgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  28235383 atgagcttatagctttttgtaagaagctatttcaagtagcttttgagcttata 28235435  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 21442771 - 21442724
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  21442771 cttatagctttttgtaagaaactatttcaagtagcttttgaatttata 21442724  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 3370546 - 3370607
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||||| |||||| |||||||    
T  3370546 catgagcttatagcattttttgaaaagctatttcaagtagcttttgagcttatagctggtag 3370607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 46349886 - 46349825
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||||| |||||| |||||||    
T  46349886 catgagcttatagcgttttttgaaaagctatttcaagtagcttttgagcttatagctggtag 46349825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 596108 - 596061
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  596108 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 596061  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 31031890 - 31031835
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| ||| || |||||||||||||||||| | ||||||||||||||    
T  31031890 cttatagcgttttttgaaaagctatttcaagtagctttttagcttataactggtag 31031835  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 33979719 - 33979766
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  33979719 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 33979766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33982311 - 33982256
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| ||| || |||||||||||||||||||| |||||| |||||||    
T  33982311 cttatagcgttttttgataagctatttcaagtagcttttgagcttatagctggtag 33982256  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 35669679 - 35669632
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  35669679 cttataactttttttgagaagctatttcaagtatcttttgaacttata 35669632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 42833711 - 42833664
Alignment:
Q  27 tttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||||||||||||||| |||||| |||||| |||||||    
T  42833711 tttttttgagaatctatttcaagtagtttttgagcttatacctggtag 42833664  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 21442669 - 21442627
Alignment:
Q  121 aaaaataaattgcccactaaatagaccttaactgcccacgttc 163  Q
    ||||||||| || ||||||||||| ||||||||||||||||||    
T  21442669 aaaaataaactggccactaaataggccttaactgcccacgttc 21442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 41406300 - 41406346
Alignment:
Q  28 ttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  41406300 ttttttgagaagctatttcaagtagcttttgagcttatagctggtag 41406346  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 27826806 - 27826867
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  27826806 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 27826867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 29994218 - 29994157
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  29994218 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 29994157  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 42329025 - 42328964
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  42329025 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 42328964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 46350838 - 46350777
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  46350838 catgagcttatagcgttttttgaaaaactatttcaagtagctttttagcttatagctggtag 46350777  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 46536219 - 46536280
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  46536219 catgagcttatagcgttttctgaaaagctatttcaagtagctttttagcttatagctggtag 46536280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 46672603 - 46672660
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactg 70  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | ||||||||||    
T  46672603 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttataactg 46672660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 47479883 - 47479944
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||||||| | |||| ||| || ||| |||||||||||||| | ||||||||||||||    
T  47479883 catgaacttatatcgttttttgaaaagctaattcaagtagctttttagcttataactggtag 47479944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 4060449 - 4060509
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggta 73  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| ||||||    
T  4060449 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggta 4060509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 38224728 - 38224780
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagc-ttttgaacttataactg 70  Q
    |||||||| |||| |||||| |||||||||||||| |||||| ||||||||||    
T  38224728 cttatagcattttttgagaagctatttcaagtagctttttgagcttataactg 38224780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 42328165 - 42328105
Alignment:
Q  14 atgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  42328165 atgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 42328105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 47869394 - 47869338
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataact 69  Q
    ||||||||||||||| ||| |||||  ||||||||| |||||||| | |||||||||    
T  47869394 catgaacttatagctatttttgagaggctatttcaaatagcttttaagcttataact 47869338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17540358 - 17540411
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  17540358 catgagcttatagctttttgtgagaagctatttcaagtagcttttgaacttata 17540411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 17540463 - 17540514
Alignment:
Q  121 aaaaataaattgcccactaaatagaccttaactgcccacgttctattattca 172  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  17540463 aaaaataaattgcccgctaaataggccttaactgcccacgttctattattca 17540514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 35766656 - 35766716
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggta 73  Q
    ||||| |||||||| |||| ||| || ||||||||||||||||||||||||||||||||||    
T  35766656 catgagcttatagcattttttgaaaaactatttcaagtagcttttgaacttataactggta 35766716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 24463614 - 24463665
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaactta 64  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  24463614 catgagcttatagctttttgtgagaaactatttcaagtagcttttgagctta 24463665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 5050038 - 5049996
Alignment:
Q  121 aaaaataaattgcccactaaatagaccttaactgcccacgttc 163  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  5050038 aaaaataaactgcccactaaataggccttaactgcccacgttc 5049996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 25881604 - 25881665
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| |||||| ||||||||||||| |||||| |||||| |||||||    
T  25881604 catgagcttatagcgttttttgagaaactatttcaagtagattttgagcttatagctggtag 25881665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 7157494 - 7157447
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||| |||||| ||||||||| |||||||| ||||||||    
T  7157494 cttatagctttttttgagaagctatttcaaatagcttttaaacttata 7157447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 15524467 - 15524522
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||  |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  15524467 cttatagagttttttgagaagctatttcaagtagcttttgagcttatagctggtag 15524522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 6789616 - 6789555
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  6789616 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 6789555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 10815160 - 10815221
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  10815160 catgagcttatagcattttttgaaaagctatttcaagtagctttttagcttatagctggtag 10815221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 12049603 - 12049574
Alignment:
Q  40 ctatttcaagtagcttttgaacttataact 69  Q
    ||||||||||||||||||||||||||||||    
T  12049603 ctatttcaagtagcttttgaacttataact 12049574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 15498742 - 15498803
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  15498742 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 15498803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 24171462 - 24171515
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| ||||||||    
T  24171462 catgagcttatagcgttttttgaaaagctatttcaagtagctttttaacttata 24171515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 29525323 - 29525262
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  29525323 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 29525262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 36761159 - 36761220
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  36761159 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 36761220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 37530747 - 37530686
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  37530747 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 37530686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 42709408 - 42709469
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  42709408 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 42709469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 53473 - 53420
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  53473 catgaacttatagttttttgtgagaagctatttcaagtaacttttgaacttata 53420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 38746959 - 38746898
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||||||||| |||| ||| || |||||||||||||||||| |||||||| |||||||    
T  38746959 catgaacttatagcgttttttgaaaagctatttcaagtagctttttaacttatagctggtag 38746898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 29725875 - 29725929
Alignment:
Q  20 ttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  29725875 ttatagcgttttttgagaagctatttcaagtagcttttgagcttatagctggtag 29725929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 43129694 - 43129749
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| ||||||  ||||||||||||||||||| |||||| |||||||    
T  43129694 cttatagcgttttttgagaagttatttcaagtagcttttgagcttatagctggtag 43129749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 3512574 - 3512628
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggta 73  Q
    |||||||| |||| ||| || |||||||||||||||||||| |||||| ||||||    
T  3512574 cttatagcgttttttgaaaagctatttcaagtagcttttgagcttatagctggta 3512628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 14911862 - 14911923
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  14911862 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 14911923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 17121912 - 17121973
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  17121912 catgatcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 17121973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 25100343 - 25100404
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  25100343 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 25100404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 40529598 - 40529659
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  40529598 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 40529659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 43800771 - 43800710
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  43800771 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 43800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 49646126 - 49646180
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggta 73  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||    
T  49646126 cttatagcgttttttgagaagctatttcaagtagcttttgaacttatagctggta 49646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19870063 - 19870110
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  19870063 cttatagcgttttttgagaatctatttcaagtagcttttgagcttata 19870110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31624393 - 31624339
Alignment:
Q  20 ttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  31624393 ttatagcgttttttgagaagctatttcaagtagcttttgagcttatagctggtag 31624339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 51941200 - 51941250
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaactt 63  Q
    ||||| |||||| |||||||||| || ||||||||||||||||||||||||    
T  51941200 catgagcttataactttttgtgaaaaactatttcaagtagcttttgaactt 51941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 25687083 - 25687136
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||    
T  25687083 catgagcttatagcgttttttgaaaagctatttcaagtagcttttgaacttata 25687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 7141139 - 7141092
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||| |||||| |||||| |||||||||||||||||| ||||||||    
T  7141139 cttataactttttttgagaagctatttcaagtagctttttaacttata 7141092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 10656271 - 10656326
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| |||||| |||||||||||| ||||||| |||||| |||||||    
T  10656271 cttatagcgttttttgagaagctatttcaagtaacttttgagcttatagctggtag 10656326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 10870416 - 10870471
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| |||||| |||||||||||| ||||||| |||||| |||||||    
T  10870416 cttatagcgttttttgagaagctatttcaagtaacttttgagcttatagctggtag 10870471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 43940117 - 43940062
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||| |||| |||||| ||||||||||  ||||||||||||||| |||||||    
T  43940117 cttatagcgttttttgagaagctatttcaagccgcttttgaacttatagctggtag 43940062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 49648836 - 49648789
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  49648836 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 49648789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 50792412 - 50792365
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  50792412 cttatagcattttttgagaagctatttcaagtagcttttgagcttata 50792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 55495185 - 55495138
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||| ||||| |||||| |||||||||||||||||| ||||||||    
T  55495185 cttatagttttttttgagaagctatttcaagtagctttttaacttata 55495138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 6287934 - 6287995
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||| | |||| ||| || |||||||||||||||||||| |||||| |||||||    
T  6287934 catgagcttataacgttttttgaaaagctatttcaagtagcttttgagcttatagctggtag 6287995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 19801865 - 19801804
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  19801865 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 19801804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 37114436 - 37114375
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  37114436 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 37114375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 49335193 - 49335132
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  49335193 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 49335132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 38624165 - 38624226
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||| |||||||| |||||||    
T  38624165 catgagcttatagctttttttgaaaagctatttcaagtagctttttaacttatagctggtag 38624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 50940196 - 50940144
Alignment:
Q  17 aacttatagctttttgtgagaatctatttcaagtagcttttgaacttataact 69  Q
    |||||||||| |||| |||||| |||||||||||||||||||| |||||||||    
T  50940196 aacttatagcgttttttgagaaactatttcaagtagcttttgagcttataact 50940144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 44299940 - 44299885
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| || |||| |||||| ||||||||||||||||||||||||||| |||||||    
T  44299940 cttatggcgttttttgagaagctatttcaagtagcttttgaacttatagctggtag 44299885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 27747704 - 27747765
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  27747704 catgaacttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 27747765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 28314856 - 28314795
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| |||||||| |||||||    
T  28314856 catgagcttatagcgttttttgaaaagctatttcaagtagctttttaacttatagctggtag 28314795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 11823681 - 11823742
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  11823681 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 11823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 41865384 - 41865445
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||| | |||| ||| || |||||||||||||||||||| |||||| |||||||    
T  41865384 catgagcttataacgttttttgaaaagctatttcaagtagcttttgagcttatagctggtag 41865445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 46742553 - 46742606
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||||| ||||||    
T  46742553 catgagcttatagcattttttgaaaagctatttcaagtagcttttgagcttata 46742606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 47326586 - 47326525
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  47326586 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 47326525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 50586181 - 50586120
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  50586181 catgaccttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 50586120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 48817219 - 48817275
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataact 69  Q
    ||||| ||||||||||||| ||| || ||| |||||||||| ||||| |||||||||    
T  48817219 catgagcttatagctttttttgataacctacttcaagtagcatttgagcttataact 48817275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 43496260 - 43496312
Alignment:
Q  14 atgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  43496260 atgagcttatagctttttgtaagaagctatttcaagtagcttttgagcttata 43496312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 33179064 - 33179113
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataac 68  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||||    
T  33179064 cttatagcgttttttgagaagctatttcaagtagcttttgagcttataac 33179113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 44525983 - 44525936
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  44525983 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 44525936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 1876035 - 1875974
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  1876035 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 1875974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 5774190 - 5774251
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  5774190 catgagcttatagcattttttgaaaagctatttcaagtagctttttagcttatagctggtag 5774251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 7454629 - 7454690
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  7454629 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 7454690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 8875770 - 8875831
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  8875770 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 8875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 12160916 - 12160855
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  12160916 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 12160855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 14958217 - 14958278
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  14958217 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 14958278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 24520234 - 24520177
Alignment:
Q  17 aacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||| |||| |||||| |||||||||||||||||||| |||||  |||||||    
T  24520234 aacttgtagcgttttttgagaagctatttcaagtagcttttgagcttattgctggtag 24520177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 34245343 - 34245396
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| ||||||||    
T  34245343 catgagcttatagcgttttttgaaaagctatttcaagtagctttttaacttata 34245396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 39241163 - 39241102
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  39241163 catgagcttatagcattttttgaaaagctatttcaagtagctttttagcttatagctggtag 39241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 43568460 - 43568521
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || ||||||| |||||||||||| |||||| |||||||    
T  43568460 catgagcttatagcgttttttgaaaagctatttcgagtagcttttgagcttatagctggtag 43568521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 2229165 - 2229118
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||||    
T  2229165 cttatagcgttttttgagaagctatttcaagtagcttttgaacttata 2229118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 12122170 - 12122123
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  12122170 cttatagctttttttgagaagctatttcaagtagcttttaaacttata 12122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 43359298 - 43359251
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  43359298 cttatagctttttttgagaagctatttcaagtagcttttgagcttata 43359251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 17666899 - 17666960
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| |||||| |||||||||||| ||||||| |||||| |||||||    
T  17666899 catgagcttatagcgttttttgagaaactatttcaagtaacttttgagcttatagctggtag 17666960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 30317946 - 30317893
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||||| |||| ||| ||||||||||||||||||||| ||||||||    
T  30317946 catgagcttatagcgttttttgaaaatctatttcaagtagctttttaacttata 30317893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 22978181 - 22978228
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  22978181 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 22978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 25999166 - 25999119
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||||||||||| |||||| |||||||||||| ||||| ||||||||    
T  25999166 cttatagctttttttgagaagctatttcaagtacctttttaacttata 25999119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 41888911 - 41888966
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||| | |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  41888911 cttataacgttttttgagaagctatttcaagtagcttttgagcttatagctggtag 41888966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 48072079 - 48072126
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  48072079 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 48072126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 50938231 - 50938184
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  50938231 cttatagcgttttttgagaagctatttcaagtagcttttgagcttata 50938184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 43968354 - 43968308
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttga 59  Q
    ||||| |||||| |||||||||| || ||||||||||||||||||||    
T  43968354 catgagcttataactttttgtgataagctatttcaagtagcttttga 43968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 34435977 - 34435916
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  34435977 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 34435916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 41991686 - 41991625
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  41991686 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 41991625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 52959388 - 52959441
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||| |||||| ||| || |||||||||||||||||| ||||||||    
T  52959388 catgagcttataactttttatgaaaaactatttcaagtagctttttaacttata 52959441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 54463458 - 54463397
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  54463458 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 54463397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 94400 - 94353
Alignment:
Q  19 cttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||||||    
T  94400 cttatagcattttttgagaagctatttcaagtagcttttgagcttata 94353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 15508461 - 15508503
Alignment:
Q  28 ttttgtgagaatctatttcaagtagcttttgaacttataactg 70  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  15508461 ttttttgagaagctatttcaagtagcttttgagcttataactg 15508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 34574571 - 34574537
Alignment:
Q  40 ctatttcaagtagcttttgaacttataactggtag 74  Q
    |||||||||||||||||||| ||||||||||||||    
T  34574571 ctatttcaagtagcttttgagcttataactggtag 34574537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 6834048 - 6833996
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttata 66  Q
    ||||| |||||| |||||| |||||| |||||||||||||||||| ||||||||    
T  6834048 catgagcttataacttttt-tgagaagctatttcaagtagctttttaacttata 6833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 12130578 - 12130639
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  12130578 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 12130639  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 24119241 - 24119180
Alignment:
Q  13 catgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  24119241 catgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 24119180  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 20645756 - 20645816
Alignment:
Q  14 atgaacttatagctttttgtgagaatctatttcaagtagcttttgaacttataactggtag 74  Q
    |||| |||||||| |||| ||| || |||||||||||||||||| | |||||| |||||||    
T  20645756 atgagcttatagcgttttttgaaaagctatttcaagtagctttttagcttatagctggtag 20645816  T

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