View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_19 (Length: 257)
Name: NF20158_low_19
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47524260 - 47524021
Alignment:
| Q |
1 |
gaaactataccatcataaacatttttatgactgtcgtaatataactaccatcaagcaatacaaggccatataggtctattcagggatttaaggcacatga |
100 |
Q |
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| T |
47524260 |
gaaactataccatcaaagacatttttatgactgtcgtaatataactaccatcaagcaatacaaggccatacaggtctattcagggatttatggcacatga |
47524161 |
T |
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| Q |
101 |
tagtgttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524160 |
tagtgttctgaaattctaagaaagttttatcaacaaattgacacttgtcttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagc |
47524061 |
T |
|
| Q |
201 |
atccttggaggaatgcaaaaccaagcttccaactcctaag |
240 |
Q |
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| T |
47524060 |
atcctcggaggaatgcaaaaccaagcttccaactcctaag |
47524021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47529635 - 47529393
Alignment:
| Q |
1 |
gaaactataccatcataaacatttttatgactgtcgtaa---tataactaccatcaagcaatacaaggccatataggtctattcagggatttaaggcaca |
97 |
Q |
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| T |
47529635 |
gaaattatacaatcataaacatttttatgactgtcataaaactataactacagccacgcagtgtaaggccatttaggtttcttcagtggtttaaggcaca |
47529536 |
T |
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| Q |
98 |
tgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctat |
197 |
Q |
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| T |
47529535 |
tgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtctttacctgtcatcctctcaaaaccaaaagattttgtccatgtgtctat |
47529436 |
T |
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| Q |
198 |
agcatccttggaggaatgcaaaaccaagcttccaactcctaag |
240 |
Q |
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| T |
47529435 |
agcatcctcggatgaatgcaaaaccatgctttctactcctaag |
47529393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 47551222 - 47551069
Alignment:
| Q |
88 |
ttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtcc |
187 |
Q |
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||||| ||||||||||||| ||||||||| |||||||||| || |||||||| |||||||| ||| || ||| | ||||| ||| | |||| ||| |
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| T |
47551222 |
ttaagacacatgatagtgtcctgaaattcaaagaaagtataatgaacaaatttacacttgtcttcattcgtcatctcaacaaaatgaaatgattttttcc |
47551123 |
T |
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| Q |
188 |
acgtgtctatagcatccttggaggaatgcaaaaccaagcttccaactcctaagt |
241 |
Q |
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| T |
47551122 |
aagtgtctatagcatccttggaggaatgcaaaaccaagctcccaactcctaagt |
47551069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 44870171 - 44870405
Alignment:
| Q |
6 |
tataccatcataaacatttttatgactgtcgtaatataactaccatcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtg |
105 |
Q |
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|||||||| | ||||||| ||||||||||| | || || || ||||||||||| | ||||||||||||| ||||||| | ||||||||||||||||| | |
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| T |
44870171 |
tataccataaaaaacattattatgactgtcatggtacaattatcatcaagcaatgcgaggccatataggtatattcagtggtttaaggcacatgatagag |
44870270 |
T |
|
| Q |
106 |
ttctgaaattctaagaaagtattatcaacaaattgacacttgttttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatcct |
205 |
Q |
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|| ||||||||||||||||||||||||| || || |||||||| ||| | || ||||||||||||||||||| ||||||||| |||| ||||||||| | |
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| T |
44870271 |
ttgtgaaattctaagaaagtattatcaataagtttacacttgtcttcactcgtcatcctagcaaaaccaaacgattttgtccaagtgtttatagcatctt |
44870370 |
T |
|
| Q |
206 |
tggaggaatgcaaaaccaagcttccaactcctaag |
240 |
Q |
| |
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| T |
44870371 |
cagatgaatgcaaaaccaatcttcctactcctaag |
44870405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 9819367 - 9819535
Alignment:
| Q |
49 |
catcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgt |
148 |
Q |
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||||||||||| ||||||||| ||||| | ||||| | ||| || |||||| || | |||||||||||||| ||||||| ||||| ||| |||||||| | |
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| T |
9819367 |
catcaagcaatgcaaggccatttaggtgttttcagtgctttgagacacatggtactattctgaaattctaaaaaagtatgatcaataaactgacacttat |
9819466 |
T |
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| Q |
149 |
tttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgca |
217 |
Q |
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|| | || ||||| ||||||||||| | | ||||||| |||| |||||||||| |||||||||| |
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| T |
9819467 |
ctttactggccatcctggcaaaaccaaatgatcttgtccaagtgttcatagcatcctctgaggaatgca |
9819535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 9854613 - 9854445
Alignment:
| Q |
49 |
catcaagcaatacaaggccatataggtctattcagggatttaaggcacatgatagtgttctgaaattctaagaaagtattatcaacaaattgacacttgt |
148 |
Q |
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||||||||||| |||| |||||||||| | ||||| | ||| || |||||| || | |||||||||||||| ||||||| ||||| ||| |||||||| | |
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| T |
9854613 |
catcaagcaatgcaagaccatataggtgttttcagtgctttgagacacatggtactattctgaaattctaaaaaagtatgatcaataaactgacacttat |
9854514 |
T |
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| Q |
149 |
tttctccggttatcctagcaaaaccaaacgcttttgtccacgtgtctatagcatccttggaggaatgca |
217 |
Q |
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|| | || ||||| ||||||||||| | ||||||||| ||| |||||||||| |||||||||| |
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| T |
9854513 |
ctttactggccatcctggcaaaaccaaatgattttgtccaaatgttcatagcatcctctgaggaatgca |
9854445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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