View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_2 (Length: 614)
Name: NF20158_low_2
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 328 - 599
Target Start/End: Complemental strand, 47011240 - 47010971
Alignment:
| Q |
328 |
acaaacaatattgtgcatgtcaaagtaactaaatatagtaactttttactgatttattnnnnnnncaacatatttaatttaagtataaaataaacaagtt |
427 |
Q |
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| T |
47011240 |
acaaacaatattgtgcatgtcaaagtaactaaatatagtaactttttactgatttattaaaaaaacaacatatttaatttaagtataaaataaacaagtt |
47011141 |
T |
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| Q |
428 |
tcaagacaaagactcttccaaatttatagtatttttgtggaagcaaacggaaagaaaataaattaatcaatacannnnnnnctctaaggggggatttctt |
527 |
Q |
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| T |
47011140 |
tcaagacaaagactcttccaagtttatagtatttttgtggaagcaaacggaaagaaaataaattaatcaatacatttttttctctaa--ggggatttctt |
47011043 |
T |
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| Q |
528 |
gctttcaccgaaatttcttttgataccctttcaaaagccaaaagcaagaaactagaacgaagaggtggtact |
599 |
Q |
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| T |
47011042 |
gctttcaccgaaatttcttttgataccctttcaaaagccaaaagcaagaaactagaacgaagaggtggtact |
47010971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 47013398 - 47013207
Alignment:
| Q |
78 |
ggagtatttaaatcggatttttcttgaggttttaaatatcttgttttagacagttaggcatggcatctggagaaatcctattggatcactctccaccaga |
177 |
Q |
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| T |
47013398 |
ggagtatttaaatcggatttttcttgaagttttaaatatcttgttttagacagttaggcatggcatctggagaaatcctattggatcactctccaccaga |
47013299 |
T |
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| Q |
178 |
atctatgtccaaatatgtatgtgaaaatagagacaaatgtaactgtcataatannnnnnnnnnnnacataaaaataacaatagtaatattaa |
269 |
Q |
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| T |
47013298 |
atttatgtccaaatatgtatgtgaaaatagagacaaatgtaactgtcataatattttttgtttttacataaaaataacaatagtaatattaa |
47013207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 47011455 - 47011389
Alignment:
| Q |
260 |
gtaatattaataatgtttctcaaattacatcgatctacattatttgttttagagtttgtctaatatg |
326 |
Q |
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| T |
47011455 |
gtaatattaataatgtttctcaaattacatcgatctacattatttgttttagagtttgtctaatatg |
47011389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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