View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_25 (Length: 226)
Name: NF20158_low_25
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_25 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 10503 - 10701
Alignment:
| Q |
18 |
gtgtaaaggtttcttttacactttcaatcaattataatcgtcacatcataaaaactgtttgactttaatcacaagttcatgactacttctaaagtcatac |
117 |
Q |
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| T |
10503 |
gtgtaaaggtttcttttacactttcaatcaattataatcgtcacatcataaaaactgtttgactttaatcacaagttcatgactacttctaaagtcatac |
10602 |
T |
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| Q |
118 |
ctatgaatgattgcgattgttgacagtgtaaaacttttacattgactgcgtatcaaaattaaactctactcgcgggaggcttttcgttttagttcatct |
216 |
Q |
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| T |
10603 |
ctatgaatgattgcgattgttgacagtataaaacttttacattgactgcgtatcaaaattaaactctactcgcgggaggcttttcgttttagttaatct |
10701 |
T |
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Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 43051702 - 43051504
Alignment:
| Q |
18 |
gtgtaaaggtttcttttacactttcaatcaattataatcgtcacatcataaaaactgtttgactttaatcacaagttcatgactacttctaaagtcatac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43051702 |
gtgtaaaggtttcttttacactttcaatcaattataatcttcacatcatagaaactgtttgactttaatcataagttcatgactacttctaaagtcatac |
43051603 |
T |
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| Q |
118 |
ctatgaatgattgcgattgttgacagtgtaaaacttttacattgactgcgtatcaaaattaaactctactcgcgggaggcttttcgttttagttcatct |
216 |
Q |
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| T |
43051602 |
ctatgaatgattgcgattgttgacagtgtaaaacttttacattgactgcgtatcaaaattaaactctactcgcgggaggcttttcgttttagttcatct |
43051504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 15867674 - 15867627
Alignment:
| Q |
41 |
tcaatcaattataatcgtcacatcataaaaactgtttgactttaatca |
88 |
Q |
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| T |
15867674 |
tcaatcaatcataatcgtcatatcattaaaactgtttgactttaatca |
15867627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 48140447 - 48140398
Alignment:
| Q |
137 |
ttgacagtgtaaaac-ttttacattgactgcgtatcaaaattaaactcta |
185 |
Q |
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| T |
48140447 |
ttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactcta |
48140398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 13488018 - 13487978
Alignment:
| Q |
51 |
ataatcgtcacatcataaaaactgtttgactttaatcacaa |
91 |
Q |
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| T |
13488018 |
ataatcatcaaatcataaaaaatgtttgactttaatcacaa |
13487978 |
T |
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