View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20158_low_3 (Length: 454)
Name: NF20158_low_3
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 10421113 - 10420662
Alignment:
| Q |
1 |
gtcttcaactccaatggtcccaacatcataatgacataccggaacttata------------aagtttcaattcaaaagttaaagttattatgcagattt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10421113 |
gtcttcaactccaatggtcccaacatcataatgacataccggaacttatacatttgtaatgaaagtttcaattcaaaagttaaagttattatgcagattt |
10421014 |
T |
|
| Q |
89 |
ttctagatgtctcagttcaaccacttgaactacaccatgagaactaacgtaacctttttgggtacatataatatatacatttgtagcatttccagctagg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10421013 |
ttctagatgtctcagttcaaccacttgaactacgccatgagaactaacgtaaccttttttggtacatataatatatacatttgtagcatttccagctagg |
10420914 |
T |
|
| Q |
189 |
tgttcgtgtgggttttacattttccaaacctacacgtaatacatatggattttttatacgtttgcatgcagtacatgacacatgcacggggtgtagttga |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10420913 |
tgttcgtgtgggttttacattttccaaacctacacgtaatacatatggattttttatacgtttgcatgcggtacatgacacatgcacggggtgtagttga |
10420814 |
T |
|
| Q |
289 |
taacctacttcgtgtcaaattcaaacacaatgtaactcaaagcaagagtaacgtatatttcagctgttagcttattcaacattaacaaatatctatgttc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10420813 |
taacctacttcgtgtcaaattcaaacacaatgtaactcaaagcaagagtaacgtatatttcagctgttagcttattcaacattaacaaatatctatgttc |
10420714 |
T |
|
| Q |
389 |
tatcaaagaaaatatctctgcttgttatgggtgaactcctagtcaggtatat |
440 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
10420713 |
tatcaaagaaaatatcgctgcttgttatgagtgaactcctagtcaggtatat |
10420662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University