View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20158_low_6 (Length: 364)
Name: NF20158_low_6
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20158_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 91 - 307
Target Start/End: Original strand, 47458144 - 47458356
Alignment:
| Q |
91 |
gatgaatttgatttttacatgttgttacgaaaaaacaaaagattttgtgattcgggaaaacggtaaaggtaaaacctggtagcataacccaagtgacttt |
190 |
Q |
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| T |
47458144 |
gatgaatttgatttttacatgttgttacgaaaaaacaaaagattttgtgattcgggaaaacggtaaaggtaaaacctggtagcataacctaagtgacttt |
47458243 |
T |
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| Q |
191 |
agaagcagaagcatttgtatacggtgaaccaacccatcccaaaaactgtgttcatagttctgatcggtgttcagcttccattaacgattctgattacgaa |
290 |
Q |
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| T |
47458244 |
agaagcagaagcatttgtatacggtg----aacccatcccaaaaactgtgttcatagttctgatcggtgttcagcttccattaacgattctgattacgaa |
47458339 |
T |
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| Q |
291 |
aatgtcgaatcgtttcg |
307 |
Q |
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| T |
47458340 |
aatgtcgaatcgtttcg |
47458356 |
T |
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