View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20158_low_8 (Length: 357)

Name: NF20158_low_8
Description: NF20158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20158_low_8
NF20158_low_8
[»] chr2 (5 HSPs)
chr2 (84-340)||(32112857-32113114)
chr2 (1-83)||(32113079-32113160)
chr2 (1-36)||(15507829-15507864)
chr2 (1-29)||(16806241-16806269)
chr2 (1-29)||(16845522-16845550)
[»] chr8 (3 HSPs)
chr8 (1-33)||(29315474-29315506)
chr8 (1-33)||(14896951-14896983)
chr8 (1-33)||(36682993-36683025)
[»] chr7 (4 HSPs)
chr7 (1-31)||(27723667-27723697)
chr7 (1-33)||(4567760-4567792)
chr7 (1-29)||(10534647-10534675)
chr7 (1-29)||(35792727-35792755)
[»] chr5 (2 HSPs)
chr5 (1-34)||(11991891-11991924)
chr5 (1-29)||(42673690-42673718)
[»] scaffold1327 (1 HSPs)
scaffold1327 (1-29)||(1151-1179)
[»] chr6 (1 HSPs)
chr6 (1-29)||(8049626-8049654)
[»] chr4 (1 HSPs)
chr4 (1-29)||(19443253-19443281)
[»] chr3 (1 HSPs)
chr3 (1-33)||(21934135-21934167)
[»] chr1 (4 HSPs)
chr1 (1-29)||(13254369-13254397)
chr1 (1-33)||(30280973-30281005)
chr1 (1-33)||(32769355-32769387)
chr1 (1-33)||(40518820-40518852)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 84 - 340
Target Start/End: Complemental strand, 32113114 - 32112857
Alignment:
Q  84 tggaatttgttggagaaaaagatagaagttaac---nnnnnnnnntatcattgctctattctaaaacaacacttaaaaggaacggagggagcagtagtct 180  Q
    |||||||||||||||||||||||||||| ||||            |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  32113114 tggaatttgttggagaaaaagatagaagctaacaaaaaaaaaatatatcattgctctattctaaaacaacacttaaaaggaactgagggagtagtagtct 32113015  T
Q  181 agtaggttccactgtatgtgtatatatattctctctgtaacccttattttctaatcgccagtaattttgttaaaaccctagactcgtttctccgttaaaa 280  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32113014 agtaggttccactgta--tgtatatatattctctcggtaacccttattttctaatcgccagtaattttgttaaaaccctagactcgtttctccgttaaaa 32112917  T
Q  281 ccctagcatcgtttctcctcttcatcacactacgttcaggtgtgtatatcatccagtttt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  32112916 ccctagcatcgtttctcctcttcatcacactacgttcaggtgtgtgtatcacccagtttt 32112857  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32113160 - 32113079
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtgtgcnnnnnnnnntgtggaatttgttggaggaaaagatagtagctaacaaa 83  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||| ||||||||||    
T  32113160 aattgacaattgtttgttatgagagagagtgtgtgc-aaaaaaaatgtggaatttgttggagaaaaagatagaagctaacaaa 32113079  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15507829 - 15507864
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtgtgc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15507829 aattgacaattgtttgttatgagagagagagtgtgc 15507864  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16806269 - 16806241
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  16806269 aattgacaattgtttgttatgagagagag 16806241  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16845550 - 16845522
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  16845550 aattgacaattgtttgttatgagagagag 16845522  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29315506 - 29315474
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||||||||||||||||||||||||||||||||    
T  29315506 aattgacaattgtttgttatgagagagagtgtg 29315474  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14896951 - 14896983
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  14896951 aattgacaattgtttgttatgagagaaagtgtg 14896983  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36682993 - 36683025
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  36682993 aattaacaattgtttgttatgagagagagtgtg 36683025  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 27723667 - 27723697
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtg 31  Q
    |||||||||||||||||||||||||||||||    
T  27723667 aattgacaattgtttgttatgagagagagtg 27723697  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4567760 - 4567792
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  4567760 aattaacaattgtttgttatgagagagagtgtg 4567792  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10534675 - 10534647
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  10534675 aattgacaattgtttgttatgagagagag 10534647  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35792755 - 35792727
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  35792755 aattgacaattgtttgttatgagagagag 35792727  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11991924 - 11991891
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  11991924 aattgacaattgtttgttatgagagagagcgtgt 11991891  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42673718 - 42673690
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  42673718 aattgacaattgtttgttatgagagagag 42673690  T

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Target: scaffold1327 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1151 - 1179
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  1151 aattgacaattgtttgttatgagagagag 1179  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8049626 - 8049654
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  8049626 aattgacaattgtttgttatgagagagag 8049654  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19443281 - 19443253
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  19443281 aattgacaattgtttgttatgagagagag 19443253  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21934167 - 21934135
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  21934167 aattaacaattgtttgttatgagagagagtgtg 21934135  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13254397 - 13254369
Alignment:
Q  1 aattgacaattgtttgttatgagagagag 29  Q
    |||||||||||||||||||||||||||||    
T  13254397 aattgacaattgtttgttatgagagagag 13254369  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30280973 - 30281005
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  30280973 aattaacaattgtttgttatgagagagagtgtg 30281005  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32769355 - 32769387
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    ||||||||||| |||||||||||||||||||||    
T  32769355 aattgacaattatttgttatgagagagagtgtg 32769387  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40518852 - 40518820
Alignment:
Q  1 aattgacaattgtttgttatgagagagagtgtg 33  Q
    |||| ||||||||||||||||||||||||||||    
T  40518852 aattaacaattgtttgttatgagagagagtgtg 40518820  T

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