View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_high_10 (Length: 398)
Name: NF20159_high_10
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 55448713 - 55448346
Alignment:
| Q |
18 |
attatgagcaatgaaaaataagatgcatgttaattttgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgat |
117 |
Q |
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| T |
55448713 |
attatgagcaatgaaaaataagatgcatgttaattttgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgat |
55448614 |
T |
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| Q |
118 |
tggccattatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaaggaattattcatgggttg |
217 |
Q |
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| T |
55448613 |
tggccattatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtaattttttcgccagaaacaaggaactattcatgggttg |
55448514 |
T |
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| Q |
218 |
atatgcttcttgttaaatcaattcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacg |
317 |
Q |
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| T |
55448513 |
atatgcttcttgttaaatcaattcatgagtttcctcaaccaatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacg |
55448414 |
T |
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| Q |
318 |
acaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtat |
385 |
Q |
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| T |
55448413 |
acaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtat |
55448346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 39 - 385
Target Start/End: Complemental strand, 33522419 - 33522072
Alignment:
| Q |
39 |
gatgcatgttaattt-tgtatcattgtctttgcagtggaaagagaattggcatgcaggaatcaaatgtgcaagtgctgattggccattatcaaccataaa |
137 |
Q |
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| T |
33522419 |
gatgcatgttaatttgtgtgtctttgtctttgcagtgggaagggaagtggaatgcaggcatcaaatgtgcaatggctgattggccattatcaattgtgaa |
33522320 |
T |
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| Q |
138 |
agccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaaggaattattcatgggttgatatgcttcttgttaaatca |
237 |
Q |
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| T |
33522319 |
agccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaatca |
33522220 |
T |
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| Q |
238 |
attcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacgacaatttataatgcaaaagc |
337 |
Q |
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| T |
33522219 |
attgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaaagc |
33522120 |
T |
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| Q |
338 |
tcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtat |
385 |
Q |
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| T |
33522119 |
tcgctgtcgaaatgctctacatggttgatcagcttcatcttaatgtat |
33522072 |
T |
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