View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20159_high_13 (Length: 354)
Name: NF20159_high_13
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 982935 - 983257
Alignment:
| Q |
18 |
attatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982935 |
attatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaat |
983034 |
T |
|
| Q |
118 |
taatgagtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgcta |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
983035 |
taatgagtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgcta |
983134 |
T |
|
| Q |
218 |
caaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
983135 |
caaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagtatcttgtgtcttg |
983234 |
T |
|
| Q |
318 |
gtcatgcattcaaatttcctatg |
340 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
983235 |
gtcatgcattcaaatttcctatg |
983257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
235 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
334 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
|
| Q |
335 |
cctatgct |
342 |
Q |
| |
|
||| |||| |
|
|
| T |
40413324 |
cctttgct |
40413331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University