View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20159_high_14 (Length: 353)
Name: NF20159_high_14
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20159_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 48331017 - 48331340
Alignment:
| Q |
19 |
cataacttgcccatctccctcatccaaagccagatactgctctctgtcaaactgataactcgtatcacccatgattgacccaatgttttgacagccacca |
118 |
Q |
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| T |
48331017 |
cataacttgcccatctccctcatccaaagccagatactgccctctgtcaaactgataactcgtatcacccatgattgacccaatgttttgacagccacca |
48331116 |
T |
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| Q |
119 |
gattgtctagacatttcaacatacatctttcgggtgcgttcactaacagcatgcaagatatcaatattattcttgtcagctaacttcacgtttccatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48331117 |
gattgtctagacatttcaacatacatctttcgggtgcgttcactaacagcatgcaagatatcaatattattcttgtcagccaacttcacgtttccatgaa |
48331216 |
T |
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| Q |
219 |
tccgaaaatgatatgccaaagctggtaaaagttcatgattgtgatcctttataaactcaaaaatgttccatttcccatctgggtttctttttacgtgcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48331217 |
tccgaaaatgatatgccaaagctggtaaaagttcatgattgtgatcctttataaattcaaaaatgttccatttcccatctgggtttctttttacgtgcat |
48331316 |
T |
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| Q |
319 |
gcaagctttgcaatctgtcttctt |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
48331317 |
gcaagctttgcaatctgtcttctt |
48331340 |
T |
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