View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_high_23 (Length: 245)

Name: NF20159_high_23
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_high_23
NF20159_high_23
[»] scaffold1360 (1 HSPs)
scaffold1360 (18-227)||(1754-1966)
[»] chr4 (14 HSPs)
chr4 (18-227)||(3932759-3932971)
chr4 (18-140)||(3817717-3817839)
chr4 (18-111)||(3919654-3919747)
chr4 (14-136)||(4218772-4218894)
chr4 (18-136)||(3801719-3801837)
chr4 (18-136)||(4010129-4010247)
chr4 (14-140)||(3810145-3810271)
chr4 (18-136)||(3987128-3987246)
chr4 (18-91)||(4025359-4025432)
chr4 (18-84)||(4002432-4002498)
chr4 (18-88)||(3954345-3954415)
chr4 (18-91)||(3963194-3963267)
chr4 (18-77)||(4018841-4018900)
chr4 (166-227)||(4002574-4002635)
[»] chr5 (1 HSPs)
chr5 (18-136)||(13398083-13398201)
[»] chr8 (4 HSPs)
chr8 (18-74)||(7069135-7069191)
chr8 (31-67)||(6071827-6071863)
chr8 (18-90)||(7036249-7036321)
chr8 (18-90)||(7075641-7075713)
[»] chr2 (1 HSPs)
chr2 (30-68)||(42858991-42859029)


Alignment Details
Target: scaffold1360 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 1966 - 1754
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1966 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 1867  T
Q  118 attgatttgtcaattccaacaagnnnnnnngattt---aacacacgaccgatgcttactcaatttctccaacacacgagtgatgatttcatcaagcagct 214  Q
    |||| ||||||||||||||||||       |||||   ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1866 attggtttgtcaattccaacaagtctttttgatttaacaacacacaactgatgcttactcaatttctccaacacacgagtgatgatttcatcaagcagct 1767  T
Q  215 gagcatcattcct 227  Q
    |||| ||||||||    
T  1766 gagcttcattcct 1754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 3932971 - 3932759
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932971 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 3932872  T
Q  118 attgatttgtcaattccaacaagnnnnnnngattt---aacacacgaccgatgcttactcaatttctccaacacacgagtgatgatttcatcaagcagct 214  Q
    |||| ||||||||||||||||||       |||||   ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932871 attggtttgtcaattccaacaagtctttttgatttaacaacacacaactgatgcttactcaatttctccaacacacgagtgatgatttcatcaagcagct 3932772  T
Q  215 gagcatcattcct 227  Q
    |||| ||||||||    
T  3932771 gagcttcattcct 3932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 3817717 - 3817839
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3817717 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatccgca 3817816  T
Q  118 attgatttgtcaattccaacaag 140  Q
    |||| ||||||||||||||||||    
T  3817817 attggtttgtcaattccaacaag 3817839  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 3919747 - 3919654
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3919747 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaa 3919654  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 4218772 - 4218894
Alignment:
Q  14 ataattcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatc 113  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||     
T  4218772 ataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatg 4218871  T
Q  114 tgcaattgatttgtcaattccaa 136  Q
    |||||||| |||||| |||||||    
T  4218872 tgcaattggtttgtccattccaa 4218894  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 3801719 - 3801837
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||| ||||    
T  3801719 ttcttctgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatgtgca 3801818  T
Q  118 attgatttgtcaattccaa 136  Q
    |||| | |||| |||||||    
T  3801819 attggtctgtccattccaa 3801837  T

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Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 4010129 - 4010247
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||||||||| | ||||||||||||||||| ||||    
T  4010129 ttctcctgcaatagttgtcttgccaatacttcccatgccccaaattccaatgacactgaccttttctgactctttttgtaacaatgaattcaaatgtgca 4010228  T
Q  118 attgatttgtcaattccaa 136  Q
    |||||||||||||||||||    
T  4010229 attgatttgtcaattccaa 4010247  T

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Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 3810145 - 3810271
Alignment:
Q  14 ataattcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatc 113  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| || ||| || ||||||||||||||||||||| |||||||     
T  3810145 ataattcttttgcaatagttgtcttgccaataccacccataccccaaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaatg 3810244  T
Q  114 tgcaattgatttgtcaattccaacaag 140  Q
    || ||| ||||||||||||||||||||    
T  3810245 tgaaatagatttgtcaattccaacaag 3810271  T

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Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 3987128 - 3987246
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    ||||||||||||||||||||||||||| ||   ||| |||||||||||||| |||||||||| || |||||||||||||||||||||||| |||| ||||    
T  3987128 ttcttctgcaatagttgtcttgccaatgccaggcataccccaaattccaatcacacggaccttttgtgactctttctttaacaatgaatttaaatgtgca 3987227  T
Q  118 attgatttgtcaattccaa 136  Q
    |||||||||||||||||||    
T  3987228 attgatttgtcaattccaa 3987246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 4025359 - 4025432
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctt 91  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  4025359 ttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacacgaaccttttctgactctt 4025432  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 4002432 - 4002498
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttct 84  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||    
T  4002432 ttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacggaccttttct 4002498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 3954415 - 3954345
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgact 88  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||  |||| ||||||||    
T  3954415 ttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacaaaccttttctgact 3954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3963267 - 3963194
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctt 91  Q
    |||||||||||  ||||||||||||||||| ||||| |||||||| |||| |||||| || | |||||||||||    
T  3963267 ttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacacgaacatcttctgactctt 3963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 4018841 - 4018900
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggac 77  Q
    |||||||||||  ||||| |||||||||||||||||||||||||| |||| || ||||||    
T  4018841 ttcttctgcaagggttgttttgccaataccgcccatgccccaaatcccaacaatacggac 4018900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 4002574 - 4002635
Alignment:
Q  166 tgcttactcaatttctccaacacacgagtgatgatttcatcaagcagctgagcatcattcct 227  Q
    |||||||||||  ||| ||||||| || |||||||||| ||||| |||| ||||||||||||    
T  4002574 tgcttactcaacctcttcaacacaagattgatgatttcttcaagtagctcagcatcattcct 4002635  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 13398083 - 13398201
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 117  Q
    |||||| |||||||||||||| |||||||| ||||| |||||||| ||||| || || |||| |||||||||||  | ||||||||  |  |||| ||||    
T  13398083 ttcttcggcaatagttgtctttccaatacctcccataccccaaataccaattacgcgaaccttttctgactcttgatgtaacaatggttctaaatgtgca 13398182  T
Q  118 attgatttgtcaattccaa 136  Q
    |||| ||| ||||||||||    
T  13398183 attgctttctcaattccaa 13398201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 7069135 - 7069191
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacg 74  Q
    ||||||||||||||||||||| |||||||| | ||| ||||||||||||||| ||||    
T  7069135 ttcttctgcaatagttgtctttccaataccactcataccccaaattccaatagcacg 7069191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 6071827 - 6071863
Alignment:
Q  31 gttgtcttgccaataccgcccatgccccaaattccaa 67  Q
    |||||||| || |||||||||||||||||||||||||    
T  6071827 gttgtctttcccataccgcccatgccccaaattccaa 6071863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 7036321 - 7036249
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactct 90  Q
    |||||| ||||||||||| || ||||||||   ||| ||||||||||||| |||||| || | ||||||||||    
T  7036321 ttcttcagcaatagttgttttaccaataccaggcataccccaaattccaagaacacgaacatcttctgactct 7036249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7075641 - 7075713
Alignment:
Q  18 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactct 90  Q
    |||||| ||||||||||| || ||||||||   ||| ||||||||||||| ||||||||| | ||| ||||||    
T  7075641 ttcttcagcaatagttgttttaccaatacctggcataccccaaattccaagaacacggacatcttccgactct 7075713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 42858991 - 42859029
Alignment:
Q  30 agttgtcttgccaataccgcccatgccccaaattccaat 68  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  42858991 agttgtcttcccaataccgcccatgccccaaatgccaat 42859029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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