View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20159_high_3 (Length: 562)

Name: NF20159_high_3
Description: NF20159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20159_high_3
NF20159_high_3
[»] chr2 (1 HSPs)
chr2 (1-562)||(9222819-9223377)


Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 9222819 - 9223377
Alignment:
Q  1 tgaaaaatttagccaatacacaattactttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaacgagaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9222819 tgaaaaatttagccaatacaaaattactttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaaccagaatg 9222918  T
Q  101 caaaaatattgttgtagaaagctaaaaacaagacaattattgttgttgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9222919 caaaaatattgttgtagaaagctaaaaacaagacaattattgt---tgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaaga 9223015  T
Q  201 atgagaggaaattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223016 atgagaggaaattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgc 9223115  T
Q  301 atctagggcttgatcattatcttctcccactggttctgagttcttcttagaatcaaaagcaataaaagataaccctctctgctttctaggatacaaattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223116 atctagggcttgatcattatcttctcccactggttctgagttcttcttagaatcaaaagcaataaaagataaccctctctgctttctaggatacaaattt 9223215  T
Q  401 tcatgaattgaagtttggcatgaaaatgaagaaatagagttgtaatgtatatcaacatttctatgtagctttctaggaagagaaatatatttgcaacaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223216 tcatgaattgaagtttggcatgaaaatgaagaaatagagttgtaatgtatatcaacatttctatgtagctttctaggaagagaaatatatttgcaacaat 9223315  T
Q  501 tattattggtaatagaaaagggtagtgcagaaaatgacattattctattattacattttatg 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223316 tattattggtaatagaaaagggtagtgcagaaaatgacattattctattattacattttatg 9223377  T

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